View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_low_8 (Length: 585)

Name: NF6339_low_8
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_low_8
NF6339_low_8
[»] chr6 (14 HSPs)
chr6 (12-305)||(1897403-1897696)
chr6 (12-224)||(1902896-1903105)
chr6 (12-224)||(1907129-1907338)
chr6 (297-443)||(1897869-1898013)
chr6 (473-580)||(1898043-1898150)
chr6 (13-182)||(1886200-1886366)
chr6 (12-182)||(1912788-1912955)
chr6 (236-436)||(1903146-1903344)
chr6 (236-436)||(1907379-1907577)
chr6 (499-580)||(1903369-1903450)
chr6 (499-580)||(1907602-1907683)
chr6 (13-121)||(1879612-1879720)
chr6 (12-121)||(1891966-1892075)
chr6 (474-525)||(1880601-1880652)
[»] chr1 (1 HSPs)
chr1 (13-105)||(27039540-27039632)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 1897403 - 1897696
Alignment:
Q  12 atcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcgcttcatcaatcaattggctttctcaagtcagtagat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1897403 atcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcacttcatcaatcaattggctttctcaagtcagtagat 1897502  T
Q  112 tcaagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcattatggtacattttcgtggtaagtagggtaggattaatattat 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  1897503 tcaagttgggatgtcattgctggcattctcctgatagttgactattttctgtcttcactatggtacattttagtggtaagtagggtaggattaatattat 1897602  T
Q  212 gcaaaatgagagaaaatggaaatgattgacacagtcacgaacaccagacataatactgacactagcacgtagacacgaatagtcatttgagaaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1897603 gcaaaatgagagaaaatggaaatgattgacacagtcacgaacaccagacataatactgacactagcacgtagacacgaatagtcatttgagaaa 1897696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 1902896 - 1903105
Alignment:
Q  12 atcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcgcttcatcaatcaattggctttctcaagtcagtagat 111  Q
    |||||||||||||||||||||| | |||||||||||||||||  | ||||||||||  ||||| ||||||||| ||  |||||||||||||||||| |||    
T  1902896 atcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcaagtcagtggat 1902995  T
Q  112 tcaagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcattatggtacattttcgtggtaagtagggtaggattaatattat 211  Q
    ||||||||||    |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||  ||||| |||||||||| ||| ||||||    
T  1902996 tcaagttgggc---cattgctggcattctcctaatatttgactattttctgtcttcactatggtacattttactggtaggtagggtagggttagtattat 1903092  T
Q  212 gcaaaatgagaga 224  Q
    |||||||||||||    
T  1903093 gcaaaatgagaga 1903105  T

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Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 1907129 - 1907338
Alignment:
Q  12 atcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcgcttcatcaatcaattggctttctcaagtcagtagat 111  Q
    |||||||||||||||||||||| | |||||||||||||||||  | ||||||||||  ||||| ||||||||| ||  |||||||||||||||||| |||    
T  1907129 atcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcaagtcagtggat 1907228  T
Q  112 tcaagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcattatggtacattttcgtggtaagtagggtaggattaatattat 211  Q
    ||||||||||    |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||  ||||| |||||||||| ||| ||||||    
T  1907229 tcaagttgggc---cattgctggcattctcctaatatttgactattttctgtcttcactatggtacattttactggtaggtagggtagggttagtattat 1907325  T
Q  212 gcaaaatgagaga 224  Q
    |||||||||||||    
T  1907326 gcaaaatgagaga 1907338  T

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Target: chr6; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 1897869 - 1898013
Alignment:
Q  297 tttgagaaaatggaaagg-ttgaatttaacatgcatgtctatgtccgacaccaacacgtgccagacatcgatacatgttggacactgaacaccacgtctt 395  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||| ||    
T  1897869 tttgagaaaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaa---cacgtttt 1897965  T
Q  396 caatatgaagtatcagtgctacatagtatttactagaatgtataattc 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1897966 caatatgaagtatcagtgctacatagtatttactagaatgtataattc 1898013  T

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Target: chr6; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 473 - 580
Target Start/End: Original strand, 1898043 - 1898150
Alignment:
Q  473 ccatagaatccaaatcctttacaagtaaatatttcttcattacttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttatt 572  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1898043 ccatagaatccaaatcctttacaagtaaatatttcttcatttcttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttatt 1898142  T
Q  573 catctcac 580  Q
    ||| ||||    
T  1898143 catttcac 1898150  T

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Target: chr6; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 1886200 - 1886366
Alignment:
Q  13 tcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcgcttcatcaatcaattggctttctcaagtcagtagatt 112  Q
    ||||||| ||| ||||||||||| ||||| |||||||||||| |||||||| ||| |||||| ||||||||| |||||||||||||||||||||| ||||    
T  1886200 tcaatagtaggagcttttgtgttgactttttacaaaggaccatccatcatgcattcctcatctcttcatcaaccaattggctttctcaagtcagttgatt 1886299  T
Q  113 caagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcattatggtacatttt 182  Q
    ||||||||   ||||||||||||||||| |||| |||||| ||| || | | |||| |||||||||||||    
T  1886300 caagttgg---gtcattgctggcattcttctaacagttgaatatcttatgttttcactatggtacatttt 1886366  T

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Target: chr6; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 1912788 - 1912955
Alignment:
Q  12 atcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcgcttcatcaatcaattggctttctcaagtcagtagat 111  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||||||||||| |||||| ||||||||| |||||| |||||||||||| || |||    
T  1912788 atcaatagcaggtgcttttgtgttgactttctacaaaggacaatccatcatgaattcctcatcacttcatcaaccaattgactttctcaagtctgtggat 1912887  T
Q  112 tcaagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcattatggtacatttt 182  Q
    |||||||||   | ||||||||| ||||| || | | |||||||||||||   |||| |||||||||||||    
T  1912888 tcaagttgg---gccattgctggtattctgctgacaattgactattttctggtttcactatggtacatttt 1912955  T

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Target: chr6; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 236 - 436
Target Start/End: Original strand, 1903146 - 1903344
Alignment:
Q  236 attgacacagtcacgaacaccagacataatactgacactagcacgtagacacgaatagtcatttgagaaaatgg-aaaggttgaatttaacatgcatgtc 334  Q
    |||||||||||||||||||||| | |||| ||||||||||| || ||||||  |||| | ||||||  |||||| |||| ||| || |||||||||||||    
T  1903146 attgacacagtcacgaacaccatatataacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtc 1903245  T
Q  335 tatgtccgacaccaacacgtgccagacatcgatacatgttggacactgaacaccacgtcttcaatatgaagtatcagtgctacatagtatttactagaat 434  Q
    |||||| ||||||| ||||||||| |||   || | ||||| ||||||||   |||| ||||||| ||||||||| ||||| ||||||||||||||||||    
T  1903246 tatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaa---cacgccttcaatgtgaagtatcggtgctgcatagtatttactagaat 1903342  T

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Target: chr6; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 236 - 436
Target Start/End: Original strand, 1907379 - 1907577
Alignment:
Q  236 attgacacagtcacgaacaccagacataatactgacactagcacgtagacacgaatagtcatttgagaaaatgg-aaaggttgaatttaacatgcatgtc 334  Q
    |||||||||||||||||||||| | |||| ||||||||||| || ||||||  |||| | ||||||  |||||| |||| ||| || |||||||||||||    
T  1907379 attgacacagtcacgaacaccatatataacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtc 1907478  T
Q  335 tatgtccgacaccaacacgtgccagacatcgatacatgttggacactgaacaccacgtcttcaatatgaagtatcagtgctacatagtatttactagaat 434  Q
    |||||| ||||||| ||||||||| |||   || | ||||| ||||||||   |||| ||||||| ||||||||| ||||| ||||||||||||||||||    
T  1907479 tatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaa---cacgccttcaatgtgaagtatcggtgctgcatagtatttactagaat 1907575  T

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Target: chr6; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 499 - 580
Target Start/End: Original strand, 1903369 - 1903450
Alignment:
Q  499 aaatatttcttcattacttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcatctcac 580  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1903369 aaatattttttcatttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac 1903450  T

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Target: chr6; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 499 - 580
Target Start/End: Original strand, 1907602 - 1907683
Alignment:
Q  499 aaatatttcttcattacttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcatctcac 580  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1907602 aaatattttttcatttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac 1907683  T

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Target: chr6; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 1879612 - 1879720
Alignment:
Q  13 tcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcgcttcatcaatcaattggctttctcaagtcagtagatt 112  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  || |  ||||||||| || ||| ||||||||||||||  ||||    
T  1879612 tcaatagcaggtgcttttgtgttgactttctacaaaggaccatccatcatgaattcatctttacttcatcaaccagttgactttctcaagtcagaggatt 1879711  T
Q  113 caagttggg 121  Q
    |||||||||    
T  1879712 caagttggg 1879720  T

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Target: chr6; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 1891966 - 1892075
Alignment:
Q  12 atcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcgcttcatcaatcaattggctttctcaagtcagtagat 111  Q
    |||||||||||||||||||||| | |||||||||||||||||  | ||||||||||  ||||| ||||||||| ||  ||||||||||| | |||| |||    
T  1891966 atcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatggcagtggat 1892065  T
Q  112 tcaagttggg 121  Q
    ||||||||||    
T  1892066 tcaagttggg 1892075  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 525
Target Start/End: Original strand, 1880601 - 1880652
Alignment:
Q  474 catagaatccaaatcctttacaagtaaatatttcttcattacttgttattta 525  Q
    ||||||||| | |||||||||||||||||||||||||||| ||| |||||||    
T  1880601 catagaatcaatatcctttacaagtaaatatttcttcatttctttttattta 1880652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 27039632 - 27039540
Alignment:
Q  13 tcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcgcttcatcaatcaattggctttctcaagtca 105  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  27039632 tcaatagcaggtgcttttgtgttgactttctacaaaggaccatccatcatgaattcctcatcacttcatcaaccaattggctttctcaagtca 27039540  T

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