View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6340_high_10 (Length: 438)
Name: NF6340_high_10
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 20 - 429
Target Start/End: Complemental strand, 40567968 - 40567562
Alignment:
| Q |
20 |
tcaagtcagtttcatgttgtcaacatctcaaaatgccactgttatgaatacattgtgtatgactttcagttctgaacaacaatttatgacatggaataac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40567968 |
tcaagtcagtttcatgttgtcaacatctcaaaatgccactgttatgaatac---gtgtatgactttcagttctgaacaacaatttatgacatggaataac |
40567872 |
T |
|
| Q |
120 |
attgtggttatcaatgaaatgtttcaagtttcaacaatttaattgtgaaaataaaatttgtttgcatgatctttgttatgaatgaatccagaatagaatg |
219 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40567871 |
attgtggttgtcaatgaaatgtttcaagtttcaacaatttaattgtgaaaataaaatttgtttgcatgatctttgttatgaatgaatccagaatagagtg |
40567772 |
T |
|
| Q |
220 |
tgttgttgtactcactcaatgaaatgatcaatataatctctttcctttgtttggtactggattttgaactgcatcttgttccattacttttcccgtctcc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40567771 |
tgttgttgtactcactcaatgaaatgatcaatataatctctttcctttgtttggtactggattttgaactgcatcttgttccattacttttcccgtctcc |
40567672 |
T |
|
| Q |
320 |
ttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccgtcaacacaattgttggattccatgcattcattaatatct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40567671 |
ttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccatcaacacaattgttggattccatgcattcattaatatct |
40567572 |
T |
|
| Q |
420 |
agagaataat |
429 |
Q |
| |
|
|||||||||| |
|
|
| T |
40567571 |
agagaataat |
40567562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 223 - 390
Target Start/End: Complemental strand, 40572355 - 40572188
Alignment:
| Q |
223 |
tgttgtactcactcaatgaaatgatcaatataatctctttcctttgtttggtactggattttgaactgcatcttgttccattacttttcccgtctccttc |
322 |
Q |
| |
|
|||||||||||||||||| || | || || || ||||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||| || |
|
|
| T |
40572355 |
tgttgtactcactcaatgcgatagttaacatgatatctttccttgatttggtactggattttggactgcatcctgttccattatttttcccgtctccctc |
40572256 |
T |
|
| Q |
323 |
atatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccgtcaacacaat |
390 |
Q |
| |
|
||||||||| ||||||||||| || ||||| ||||||| | ||||||||||||| | |||||||||| |
|
|
| T |
40572255 |
atatccttctgggcataaacaatggtagctcccaggaagatcgatgcatgttgcctcctcaacacaat |
40572188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 269 - 429
Target Start/End: Complemental strand, 40601303 - 40601143
Alignment:
| Q |
269 |
tttggtactggattttgaactgcatcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatg |
368 |
Q |
| |
|
|||||||||||| || | |||||||| |||||||||| ||||||||||||| ||||||||||| |||||| |||| || |||||||| ||| |||||| |
|
|
| T |
40601303 |
tttggtactggagttcggactgcatcctgttccattatttttcccgtctccctcatatccttctgggcatgaacaatggtagcttccgggatgattgatg |
40601204 |
T |
|
| Q |
369 |
catgttgccccgtcaacacaattgttggattccatgcattcattaatatctagagaataat |
429 |
Q |
| |
|
||| | ||| | |||||||| | |||||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
40601203 |
catctcgcctcctcaacacagtaattggattccatgcaatcattaacatctaaaggataat |
40601143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 420
Target Start/End: Complemental strand, 40578796 - 40578611
Alignment:
| Q |
223 |
tgttgtactcactcaatgaaatgatcaatataatctctttcctttgtttggtactggattttgaactgcatcttgttccattacttttcccgtctccttc |
322 |
Q |
| |
|
||||||||||||||| || |||||| || || |||||||| ||| ||||||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
40578796 |
tgttgtactcactcagtgcaatgattaacatgatctctttacttgatttggtactggattttggactgcatctttttcc------------gtctccttc |
40578709 |
T |
|
| Q |
323 |
atatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccgtcaacacaattgttggattccatgcattcattaatatcta |
420 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||| ||||||||||| ||||| |||| ||| | ||||||||| ||||||||| || ||||| |
|
|
| T |
40578708 |
atatccttttgggcataaacaatggtagcttccaggaagattgatgcatgtcgccccctcaaaacagtaattggattccttgcattcatcaacatcta |
40578611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 429
Target Start/End: Complemental strand, 40590705 - 40590555
Alignment:
| Q |
279 |
gattttgaactgcatcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccc |
378 |
Q |
| |
|
||||||| | ||||| |||| ||||| | || |||||||| |||| ||||| |||||||||||| || ||||||||||||| ||| |||||||||| |
|
|
| T |
40590705 |
gattttggattgcattttgtgccattcatctttccgtctccctcatgtcctttcgggcataaacaatggtagcttccaggaagattgtcgcatgttgcct |
40590606 |
T |
|
| Q |
379 |
cgtcaacacaattgttggattccatgcattcattaatatctagagaataat |
429 |
Q |
| |
|
| | |||||| | || || ||| |||||||||||||||||| |||||||| |
|
|
| T |
40590605 |
cttgaacacagtcattagactccgtgcattcattaatatctaaagaataat |
40590555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 306 - 420
Target Start/End: Complemental strand, 40596862 - 40596748
Alignment:
| Q |
306 |
cttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccgtcaacacaattgttggattccatgc |
405 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| || || |||||||||| ||| ||||||| ||||| | || ||| | ||||||||| ||| |
|
|
| T |
40596862 |
ctttttccgtctccttcatatccttttgggcataaacaatggtaacttccaggaagattggtgcatgtcgcccccttaaaacagtcattggattccttgc |
40596763 |
T |
|
| Q |
406 |
attcattaatatcta |
420 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
40596762 |
attcatcaacatcta |
40596748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 40596932 - 40596860
Alignment:
| Q |
224 |
gttgtactcactcaatgaaatgatcaatataatctctttcctttgtttggtactggattttgaactgcatctt |
296 |
Q |
| |
|
||||||||||||||||| | ||| |||||| |||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
40596932 |
gttgtactcactcaatgcagtgaccaatatgtactctttccttgatttggtaatggatttttgactgcatctt |
40596860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 193 - 429
Target Start/End: Original strand, 2015957 - 2016190
Alignment:
| Q |
193 |
tgttatgaatgaatccagaatagaatgtgttgttgtactcactcaatgaaatgatcaatataatctctttcctttgtttggtactggattttgaactgca |
292 |
Q |
| |
|
||||||||||| ||| | ||||||||||||| ||||||||||| || |||||||| ||| |||||||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
2015957 |
tgttatgaatgcatcaataatagaatgtgtt---gtactcactcattgcaatgatcattatgatctcttttcttgatttggtattggattttggactgca |
2016053 |
T |
|
| Q |
293 |
tcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccgtcaacacaattg |
392 |
Q |
| |
|
| |||||||||| | ||||||| ||| |||||| || |||| |||||||| || ||||||||||||| ||| |||||||||| | |||||||| | |
|
|
| T |
2016054 |
ttttgttccattcatcttcccgtttccctcatattctgccggacataaacactggtagcttccaggaagattggtgcatgttgcttcctcaacacagtca |
2016153 |
T |
|
| Q |
393 |
ttggattccatgcattcattaatatctagagaataat |
429 |
Q |
| |
|
||||| ||||| |||||||||||||||| || ||||| |
|
|
| T |
2016154 |
ttggactccatacattcattaatatctaaaggataat |
2016190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University