View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_high_23 (Length: 255)
Name: NF6340_high_23
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 5996065 - 5996184
Alignment:
| Q |
8 |
agattattctatcagtagcctagctctccattaatatatattgataaaaccataataactcattgttaaagtcgatggctcactaaaattaaaaagataa |
107 |
Q |
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| T |
5996065 |
agattattctatcagtagcctagctctccattcatatatattgataaaaccataataactcatcgttaaggtcgatggctcactaaaattaaaaagataa |
5996164 |
T |
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| Q |
108 |
tgaaagttaaaatgaaacat |
127 |
Q |
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|||||||||||||||||||| |
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| T |
5996165 |
tgaaagttaaaatgaaacat |
5996184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 46947546 - 46947442
Alignment:
| Q |
8 |
agattattctatcagtagcctagctctccattaatatatattgataaaaccataataactcattgttaaagtcgatggctcactaaaattaaaaagataa |
107 |
Q |
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||||| |||||| ||||||||||||||||||| |||||||||| |||| ||| | |||||||| || || | |||||||||||| ||||||||||| |
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| T |
46947546 |
agattgttctatgagtagcctagctctccattcctatatattgagcaaactgtaagagctcattgtaaaggtacacggctcactaaaactaaaaagataa |
46947447 |
T |
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| Q |
108 |
tgaaa |
112 |
Q |
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||||| |
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| T |
46947446 |
tgaaa |
46947442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 42030278 - 42030400
Alignment:
| Q |
120 |
tgaaacatttcactaattaatctatttagttttaacggaaaaaaccta-catgtacaacccttttggtatggtggatgccttgggttttggtgggcttgg |
218 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030278 |
tgaaacatgtcactaattaatcttgttagttttaacggaaaaaacctaacatgtacaacccttttggtatggtggatgccttgggttttggtgggcttgg |
42030377 |
T |
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| Q |
219 |
catgtatgtccggagttgttttt |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
42030378 |
catgtatgtccggagttgttttt |
42030400 |
T |
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