View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6340_high_26 (Length: 248)

Name: NF6340_high_26
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6340_high_26
NF6340_high_26
[»] chr8 (12 HSPs)
chr8 (1-238)||(17822156-17822393)
chr8 (1-237)||(17779867-17780103)
chr8 (8-237)||(17800854-17801083)
chr8 (25-237)||(17691655-17691867)
chr8 (12-235)||(17717311-17717531)
chr8 (5-237)||(17813285-17813517)
chr8 (23-237)||(17868894-17869105)
chr8 (10-237)||(17920614-17920838)
chr8 (106-237)||(17789075-17789211)
chr8 (10-183)||(17817479-17817649)
chr8 (10-183)||(17851858-17852028)
chr8 (10-183)||(17843343-17843513)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 17822156 - 17822393
Alignment:
Q  1 tttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagactta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  |||    
T  17822156 tttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagcagcatttccaccagcttta 17822255  T
Q  101 tcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17822256 tcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatctt 17822355  T
Q  201 caataatctcatgacatgtgtgtactttgccatctgtg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17822356 caataatctcatgacatgtgtgtactttgccatctgtg 17822393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 17779867 - 17780103
Alignment:
Q  1 tttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagactta 100  Q
    |||| ||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||  |||||||||   | |||| | ||| ||  ||||    
T  17779867 tttgccaaagtattccatgtagccatttggagggtcaatgtcctcattgatcttctcatattcaactgtccatttagatgcagcagtgccatcaccctta 17779966  T
Q  101 tcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatctt 200  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||  ||||    
T  17779967 tcaattacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaaagagcttgaaaatgatttttttgttctgttcatcaacttctt 17780066  T
Q  201 caataatctcatgacatgtgtgtactttgccatctgt 237  Q
    ||| | ||||||||||||||||||| |||||||||||    
T  17780067 caagactctcatgacatgtgtgtaccttgccatctgt 17780103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 17800854 - 17801083
Alignment:
Q  8 aagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaatta 107  Q
    ||||| |||||  ||||||||||||| ||||||||||| ||||| ||| ||||||||| |||||||||||| | || | | ||| ||  |||||||||||    
T  17800854 aagtaatccatccagccatttggagggtcaatatcctcgttgatcttcacatattcaacagtccatttaactgcagaagtcccatcacccttatcaatta 17800953  T
Q  108 cttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaataat 207  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||  ||||||||||| || |||||  |||||||   |    
T  17800954 cttcaatgatgagcttaaagtccttatagtgctcatcaatatctccaccaaagagcttgtaagtgcctttcttgtttttttcatcaatttcttcaacctt 17801053  T
Q  208 ctcatgacatgtgtgtactttgccatctgt 237  Q
    |||||||||||||||||| || ||||||||    
T  17801054 ctcatgacatgtgtgtaccttaccatctgt 17801083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 17691655 - 17691867
Alignment:
Q  25 atttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattacttcaaggatgagctta 124  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| | | ||| ||| ||||||||||||||||| ||||||||||    
T  17691655 atttggaggttcaatatcctcattgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaattacttcaatgatgagctta 17691754  T
Q  125 aagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgta 224  Q
    ||||||||||| || |||||||| ||| ||||||||| ||||  |  |||||| ||||| | || |||||  ||||||| | | ||||||||||||| ||    
T  17691755 aagaccttatattgctcatcaatttcttcaccaaagatcttgtgaacgatttttttgttcttttcatcaatttcttcaaaactttcatgacatgtgtata 17691854  T
Q  225 ctttgccatctgt 237  Q
    | || ||||||||    
T  17691855 ccttaccatctgt 17691867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 17717311 - 17717531
Alignment:
Q  12 agtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattacttc 111  Q
    |||||||  |||||||||| || ||||||||||||||||| |||| |||||||| |||||||||  |||   || | ||| ||   |||||||||||||     
T  17717311 agtccatccagccatttggtgggtcaatatcctcattgatcttctgatattcaacagtccattttgcagctccagtgccatcaccattatcaattacttg 17717410  T
Q  112 aaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaataatctca 211  Q
    || ||| |  ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| |||| |||||   |||| ||| |||||    
T  17717411 aatgatcaaattaaagaccttatagtgctcatcaatgtctccaccgaagagcttgaaagtgatttttttgttctgttcatcaa---cttcgatactctca 17717507  T
Q  212 tgacatgtgtgtactttgccatct 235  Q
    |||||||||||||| || ||||||    
T  17717508 tgacatgtgtgtaccttaccatct 17717531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 17813285 - 17813517
Alignment:
Q  5 gcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaa 104  Q
    |||| |||||||||  ||||||| ||||  ||||||||||||||||| ||| |||||||||||||||||||||  | |||||| |   ||   |||||||    
T  17813285 gcaacgtagtccatccagccattaggagcgtcaatatcctcattgatcttcacatattcaatagtccatttaatggcagcactactgtcacttttatcaa 17813384  T
Q  105 ttacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaat 204  Q
    ||| |||||  ||||| |||||  |||||||||  ||| ||||||||||||| ||||||||| || ||| ||| || || | || |||||  |||||||     
T  17813385 ttatttcaataatgagtttaaaatccttatagttctcaccaatatctccaccgaagagcttgtaactgagttttttattcttttcatcaacttcttcaac 17813484  T
Q  205 aatctcatgacatgtgtgtactttgccatctgt 237  Q
    | ||||||||||||||||||| |||||||||||    
T  17813485 actctcatgacatgtgtgtaccttgccatctgt 17813517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 17868894 - 17869105
Alignment:
Q  23 ccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattacttcaaggatgagct 122  Q
    |||||||||| |||||||||||||||  | |||||||| |||||| ||||| |||||| || ||||||| ||| ||| | ||  ||||| | ||||||||    
T  17868894 ccatttggagtatcaatatcctcattattcttctcataatcaatactccatctaacagcagaacttccatcagccttgttaagcacttctaagatgagct 17868993  T
Q  123 taaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtg 222  Q
    |||| |||||||||| |   ||||||||||||||||| |||||| |||||||||| ||||| || | |||||  ||||||| | ||||||  ||||||||    
T  17868994 taaataccttatagttt---tcaatatctccaccaaacagcttgtaagtgatttttttgttctgatcatcaacttcttcaacactctcattgcatgtgtg 17869090  T
Q  223 tactttgccatctgt 237  Q
    ||| | |||||||||    
T  17869091 tacctcgccatctgt 17869105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 17920614 - 17920838
Alignment:
Q  10 gtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattact 109  Q
    |||||||||  ||||||||||||  ||||  ||||||||| | |||||||| |||||||||||| |||||| || ||||||| | | ||| | ||  |||    
T  17920614 gtagtccatccagccatttggagtctcaacttcctcattgttcttctcataatcaatagtccatctaacagcagaacttccatctgccttgttaagcact 17920713  T
Q  110 tcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaataatct 209  Q
    || | |||||||||||||||||| |||| |   ||||||||||||||||| ||||||||||||||||| ||||| || | |||||  |||||||    ||    
T  17920714 tctaagatgagcttaaagaccttgtagttt---tcaatatctccaccaaacagcttgaaagtgatttttttgttctgctcatcaacttcttcaacctgct 17920810  T
Q  210 catgacatgtgtgtactttgccatctgt 237  Q
    |||  ||||||||||| |||||||||||    
T  17920811 cattgcatgtgtgtaccttgccatctgt 17920838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 17789075 - 17789211
Alignment:
Q  106 tacttcaaggatgagcttaaagaccttatagtgttcatcaatatctcc----accaaagagcttgaaagtg-attttcttgttttgtttatcaagatctt 200  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||    ||||||||||||  |||||  |||| || ||  ||| |||||  ||||    
T  17789075 tacttcaagaatgagcttaaagaccttatagtgctcatcaatatctccaccaaccaaagagcttataagtgtttttttttattcagttcatcaacttctt 17789174  T
Q  201 caataatctcatgacatgtgtgtactttgccatctgt 237  Q
    ||| | ||||||||||||||||||| |||||||||||    
T  17789175 caacactctcatgacatgtgtgtaccttgccatctgt 17789211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 17817479 - 17817649
Alignment:
Q  10 gtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattact 109  Q
    |||||||||  ||||||| |||| |||||||||||||||  | |||||||| |||||||||||| |||||| || |||||||  |  |||   ||| |||    
T  17817479 gtagtccatccagccattgggagtatcaatatcctcatttttcttctcataatcaatagtccatctaacagcagaacttccattatccttgataatcact 17817578  T
Q  110 tcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgtt 183  Q
    || | ||| |  |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||| |||||    
T  17817579 tctaagataacgttaaagaccttatagttt---tcaatatctccaccaaacagcttgaaagtgatttttttgtt 17817649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 17851858 - 17852028
Alignment:
Q  10 gtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattact 109  Q
    |||||||||  | |||||||||| ||||| || ||||||| | |||||||| |||||||||||| ||| || || | |||||  |  |||   ||| |||    
T  17851858 gtagtccatccaaccatttggagtatcaacattctcattgttcttctcataatcaatagtccatctaagagcagaagttccattatccttgataatcact 17851957  T
Q  110 tcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgtt 183  Q
    || | ||||||||||||||||||||||| ||||   |||||||||||||| ||||||||||||||||| |||||    
T  17851958 tctaagatgagcttaaagaccttatagttttca---atatctccaccaaaaagcttgaaagtgatttttttgtt 17852028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 17843343 - 17843513
Alignment:
Q  10 gtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattact 109  Q
    |||||||||  ||||||| |||| |||||||||||||||  | ||||||||  ||||||||||| |||||| || |||||||  |  |||   ||| |||    
T  17843343 gtagtccatccagccattgggagtatcaatatcctcatttttcttctcataaccaatagtccatctaacagcagaacttccattatccttgataatcact 17843442  T
Q  110 tcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgtt 183  Q
    || | ||| |  |||||||||||||||| ||||   |||||||||||||| ||||||||||||||||| |||||    
T  17843443 tctaagataacgttaaagaccttatagttttca---atatctccaccaaacagcttgaaagtgatttttttgtt 17843513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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