View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_high_28 (Length: 235)
Name: NF6340_high_28
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17821967 - 17821747
Alignment:
| Q |
1 |
atgtataaataaatggatattttgtgtttgcagttaatctatacaatttgtgaaatgnnnnnnnnnngttttnnnnnnnnttataagcataatctcctta |
100 |
Q |
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| T |
17821967 |
atgtataaataaatggatattttgtgtttgcagttaatctatagaatttgtgaaatgtttttgtt--gttttaaaaaaaattatacgcataatctcctta |
17821870 |
T |
|
| Q |
101 |
acactacaattccttattgtgctatatttcgaaattatttgtaagtttagttggttaatctaccattagtagaatacttaagctctgccaaagt-aaaag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |
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| T |
17821869 |
acactacaattccttattgtgctatatttcgaaattatttgtaagtttagttggttaatttactattagtagaatacttaagctctgccaaagtaaaaag |
17821770 |
T |
|
| Q |
200 |
tgtaagaaacttaacataaaatt |
222 |
Q |
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| |||||||| |||||||||||| |
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| T |
17821769 |
tttaagaaacataacataaaatt |
17821747 |
T |
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