View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6340_high_30 (Length: 225)
Name: NF6340_high_30
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_high_30 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 35928534 - 35928333
Alignment:
| Q |
23 |
tgattttgatcatggttagaaaaacctcaagaaatcttttacgaatttacaattacgagtcataaaaacgaactacctcacatgaatactcctcctttta |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35928534 |
tgattttgatcatggttagaaaaacctcgagaaatcttttacgaatttacaattatgagtcataaaaacgaactacctcacatgaatac---tcctttta |
35928438 |
T |
|
| Q |
123 |
tagtgaactcttatgagttctggtaaactctaattaaatatagataaacatttgattttac--tagcaagttaacgagttgagtggacaaaagataaaca |
220 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
35928437 |
tagtgaactcttatgagttccggtaaactctaattaaatctagataaacatttgattttactatagcaagttaaagagttgagtcgaccaaagataaaca |
35928338 |
T |
|
| Q |
221 |
aattt |
225 |
Q |
| |
|
||||| |
|
|
| T |
35928337 |
aattt |
35928333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University