View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_high_9 (Length: 464)
Name: NF6340_high_9
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 5 - 455
Target Start/End: Original strand, 35177888 - 35178338
Alignment:
| Q |
5 |
actactttcactattctctttccatcttcaaccacactcttcacccttctctcttcctctataatctcctcatcaaatccttcttcaaacgcaactcttt |
104 |
Q |
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| T |
35177888 |
actactttcactattctctttccatcttcaaccacactcttcacccttctctcttcctctataatctcctcatcaaatccttcttcaaacgcaactcttt |
35177987 |
T |
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| Q |
105 |
ccaaaccctcatttctcttttcaatcaattaagactaaatggtctttaccctgataattatacttacccttttgttttaaaggctgttgctttcattgct |
204 |
Q |
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| T |
35177988 |
ccaaaccctcatttctcttttcaatcaattaagactaaatggtctttaccctgataattatacttacccttttgttttaaaggctgttgctttcattgct |
35178087 |
T |
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| Q |
205 |
gattttcgtcaagggactaaaattcatgcttttgtttttaagactggttcagattctgattattatgtttctaattcgtttatggatatgtatgctgaat |
304 |
Q |
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| T |
35178088 |
gattttcgtcaagggactaaaattcatgcttttgtttttaagactggtttagattctgattattatgtttctaattcgtttatggatatgtatgctgaat |
35178187 |
T |
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| Q |
305 |
tgggtcggattgattttgtacggaaactgtttgatgaaatttctgagagagatagtgtttcgtggaatgttatgatttctggttgtgtaaagtgtagtag |
404 |
Q |
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| T |
35178188 |
tgggtcggattgattttgtacggaaactgtttgatgaaatttctgagagagatagtgtttcgtggaatgttatgatttctggttgtgttaagtgtaggag |
35178287 |
T |
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| Q |
405 |
atttgaagaggcggtggaggttttccaaaggatgagggtggatagtgatga |
455 |
Q |
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| T |
35178288 |
atttgaagaggcggtggaggttttccaaaggatgagggtggatagtaatga |
35178338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 2910174 - 2910113
Alignment:
| Q |
325 |
cggaaactgtttgatgaaatttctgagagagatagtgtttcgtggaatgttatgatttctgg |
386 |
Q |
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| T |
2910174 |
cggaaactgtttaatgaaatgcctgagagagatttggtttcgtggaatgtgatgattactgg |
2910113 |
T |
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