View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_11 (Length: 433)
Name: NF6340_low_11
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 21297674 - 21298080
Alignment:
| Q |
16 |
ttgctgctccattatcatttgaagttcattaggtcgacaaggaatagttagtgcaccaactccattaaatccaaatttttcagctgcttgttccaatagc |
115 |
Q |
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||||||| ||| || ||| | |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21297674 |
ttgctgcaccaataacatcttaagttcattaggcctacaaggaatagttagtgcaccatctccattaaatccaaatttttcagctgcttgttccaataga |
21297773 |
T |
|
| Q |
116 |
ctcacaaatattggatttgctaaacaactcaatggcacaataaatctctttgcttcatcttcatcttcatccttagcaatcacaacaaaatgtccttttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21297774 |
ctcacaaatattggatttgctaaacaactcaatggcacaataaatctctttgcttcatcttcatcttcatccttagcaatcacaacaaaatgtccttttt |
21297873 |
T |
|
| Q |
216 |
tcacatcctcagccacataccttgatttataatcatt------------taggattttttggagctttttgaagacattattcttgagcttcaaaattcc |
303 |
Q |
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||||||||| |||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
21297874 |
tcacatcctttgccacataccttgatttataatcatttcttcccattaatagggttttgtggagcttaatgaagacattattcttgagcttcaaaattcc |
21297973 |
T |
|
| Q |
304 |
acccacaacaaccattttgatttctagttgtttttaagatgtatatgtgtacaagatagannnnnnnnnnnnngttgatgatttgatcaatttaatatgc |
403 |
Q |
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| T |
21297974 |
acctacaacaaccattttgatttctagttgtttttaagatgtatatgtgttcaagatagatttgtttta------tgatgatttgatcaatttaatatgc |
21298067 |
T |
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| Q |
404 |
tttatatttatag |
416 |
Q |
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||||||||||||| |
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| T |
21298068 |
tttatatttatag |
21298080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 21307098 - 21307452
Alignment:
| Q |
15 |
tttgctgctccattatcatttgaagttcattaggtcgacaaggaatagttagtgcaccaactccattaaatccaaatttttcagctgcttgttccaatag |
114 |
Q |
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|
|||||||||||| |||||| |||| |||||||||||||||||||| || | ||||||| |||||||||||||| ||||||||||||||| ||||||||| |
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| T |
21307098 |
tttgctgctccaatatcatctgaaattcattaggtcgacaaggaactgtaattgcaccatctccattaaatccatatttttcagctgcttcttccaatag |
21307197 |
T |
|
| Q |
115 |
cctcacaaatattggatttgctaaacaactcaatggcacaataaatctctttgcttcatcttcatcttcatccttagcaatcacaacaaaatgtcctttt |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21307198 |
actcacaaatattggatttgttaaacaactcaatggcacaataaatctctttg------cttcatcttcatccttagcaatcacaacaaaatgtcctttt |
21307291 |
T |
|
| Q |
215 |
ttcacatcctcagccacataccttgatttataatcatt------------taggattttttggagctttttgaagacattattcttgagcttcaaaattc |
302 |
Q |
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|||||||||| ||| ||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21307292 |
ttcacatcctttgcctcataccttgatttattatcctttcttcccaataatagggttttttggagctttttgaagacattattcttgagcttcaaaattc |
21307391 |
T |
|
| Q |
303 |
cacccacaacaaccattttgatttctagttgtttttaagatgtatatgtgtacaagataga |
363 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21307392 |
cacctacaacaaccattttgatttctagttgtttttaagatgtatatgtgttcaagataga |
21307452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 21307462 - 21307499
Alignment:
| Q |
379 |
tgatgatttgatcaatttaatatgctttatatttatag |
416 |
Q |
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|||||||||||| |||||||||||||| |||||||||| |
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| T |
21307462 |
tgatgatttgatgaatttaatatgcttaatatttatag |
21307499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 40770121 - 40769997
Alignment:
| Q |
110 |
aatagcctcacaaatattggatttgctaaacaactcaatggcacaataaatctctttgcttcatcttcatcttcatccttagcaatcacaacaaaatgtc |
209 |
Q |
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||||||||||||||| ||||||| | ||||||||| ||||| | | ||||||||||||||| ||||| | | |||||||||||||| ||||||||| |
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| T |
40770121 |
aatagcctcacaaatgttggattagttaaacaacttaatggtaacacaaatctctttgcttcttcttccttcctacccttagcaatcacagcaaaatgtc |
40770022 |
T |
|
| Q |
210 |
cttttttcacatcctcagccacata |
234 |
Q |
| |
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||| || |||||||||| |||||| |
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| T |
40770021 |
cttcctttacatcctcaggcacata |
40769997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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