View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6340_low_13 (Length: 408)
Name: NF6340_low_13
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 21 - 395
Target Start/End: Complemental strand, 1538096 - 1537716
Alignment:
| Q |
21 |
ctaggaatggttctctgattgaatgccttgttctattgggcatcaacttttacatttctatagtctttgttcattatttcaaagatgattatacaaaata |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1538096 |
ctaggaatggttctctgattgaatgccttgttctattgggcatcaacttttacatttctatagtctttgttcattatttcaaagatgattatacaaaata |
1537997 |
T |
|
| Q |
121 |
tgctataatattctgggtttctttcattgtgttaatcatcatcttcaaaaggaaggatttttgcgatcagcttaagttccttgtgcatgttactgggata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1537996 |
tgctataatattctgggtttctttcattgtgttaatcatcatcttcaaaaggaaggatttttgcgatcagcttaagttccttatgcatgttactgggata |
1537897 |
T |
|
| Q |
221 |
agttatctgttttgggggataatagctgtcatctgttactgttgtggttactgttgtggtggttgttaccactactgtaaccacaataagtggttttgct |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
1537896 |
agttatctgttttgggggataatagctgtcatctgttactgttgtggttactgttgtggtggttgttaccagtactgtaaccacaataactggttttgct |
1537797 |
T |
|
| Q |
321 |
actgctttgatcagaaacctgaggtgg---aggagga---ggagccgctaatccaaagaaattcaaatgctgtgtgatatt |
395 |
Q |
| |
|
||||| ||| |||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1537796 |
actgcattggtcagaaacttgaggtggtggaggaggaggaggagccgctaatccaaagaaattcaaatgctgtgtgatatt |
1537716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 95 - 268
Target Start/End: Original strand, 10164564 - 10164737
Alignment:
| Q |
95 |
tatttcaaagatgattatacaaaatatgctataatattctgggtttctttcattgtgttaatcatcatcttcaaaaggaaggatttttgcgatcagctta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10164564 |
tatttcaaagatgattatacaaaatatgccataatattatgggtttctttcattgtcttaatcatcatcttcaaaaggaaggatttttgggatcagctta |
10164663 |
T |
|
| Q |
195 |
agttccttgtgcatgttactgggataagttatctgttttgggggataatagctgtcatctgttactgttgtggt |
268 |
Q |
| |
|
| |||||| || |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10164664 |
aattccttttgaatgttactgggataagatgtctgttttgggggataatagctgtcatctgttactgttgtggt |
10164737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 10164724 - 10164766
Alignment:
| Q |
267 |
gttactgttgtggtggttgttaccactactgtaaccacaataa |
309 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
10164724 |
gttactgttgtggtggttgttaccaatattgtagccacaataa |
10164766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University