View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_14 (Length: 396)
Name: NF6340_low_14
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 35 - 377
Target Start/End: Original strand, 36083898 - 36084240
Alignment:
| Q |
35 |
aaagctaatccttaaatcttggtcaaggttttaaaaaacggtctgcaacggaaaatatagcagcgttttcaacgttatattgtcacggacatcaaattgt |
134 |
Q |
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| T |
36083898 |
aaagctagtccttaaatcttggtcaaggttttaaaaaatggtctgcaacggcaaatatagccgtgatttcaacgttatattgtcaccaacatcaaattgt |
36083997 |
T |
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| Q |
135 |
gatcgctattgcggaaacacaagttgtatttatccgtgattttctacaatatcaaagattactgcgtggccgcgaccatgattttgaaactttgcacaaa |
234 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36083998 |
gatcgctatcgcggaaacacaagttgtatttatccgcaattttctacaatatcaaatattaatgcgtggccgcgaccatgattttgaaactttgcacaaa |
36084097 |
T |
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| Q |
235 |
gatttataaatgcataaaaaccaaacaaacaatggaacattataaacaatctagctcaaattcagtgtttgtttattggacttacttctcttatctcagc |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084098 |
gatttataaatgcataaaaaccaaacaaacaatggaacattataaacaatctagctcaaattcagtgtttgtttattggacttacttctcttatctcagc |
36084197 |
T |
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| Q |
335 |
caatcgctttgtttccttttcgactcgaccgagatgagcatga |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084198 |
caatcgctttgtttccttttcgactcgaccgagatgagcatga |
36084240 |
T |
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