View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_17 (Length: 338)
Name: NF6340_low_17
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 9058115 - 9057800
Alignment:
| Q |
7 |
gaagatagaacaaaaggagttaataagtaagtaaatgagataaattaaacactatagatatacatataaaactgtttaaattactacaatgataaataaa |
106 |
Q |
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| T |
9058115 |
gaagatagaacaaaaggagttgataagtaaatagatgagataaattaaacactatagatatacatataaaacagtttaaattactacaatgataaataaa |
9058016 |
T |
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| Q |
107 |
atgaaaaatttatacattattcatcatgaaccatgaaccaataactcacatttctagggtttggttaaaccaaatagatacaaacttttgactcttgtaa |
206 |
Q |
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| T |
9058015 |
at-aaaaatttatacattattcatcatgaaccatgaaccaataactcacatttctagggtttggttaaaccaaatagatacaaacttttgactcttgtaa |
9057917 |
T |
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| Q |
207 |
aatattctcttccaaattcttctccaactcactttcatagttactccattctctttgttgtgtccatcttgcattcaaacatgaatcatctttaatagtg |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9057916 |
aatattctcttccaaattcttctccaattcactttcatagttactccattctctttgttgtgtccatcttgcattcaaacatgaatcatctttaatagtg |
9057817 |
T |
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| Q |
307 |
caaaaggaggtagaaga |
323 |
Q |
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| T |
9057816 |
caaaaagaggtagaaga |
9057800 |
T |
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