View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6340_low_19 (Length: 332)

Name: NF6340_low_19
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6340_low_19
NF6340_low_19
[»] chr1 (7 HSPs)
chr1 (13-322)||(11871192-11871506)
chr1 (198-305)||(14393023-14393130)
chr1 (55-165)||(18628988-18629098)
chr1 (68-107)||(26762241-26762280)
chr1 (43-105)||(16219100-16219162)
chr1 (43-125)||(18650452-18650534)
chr1 (44-105)||(19757735-19757796)
[»] chr8 (3 HSPs)
chr8 (43-97)||(41566168-41566222)
chr8 (43-107)||(1029745-1029808)
chr8 (43-119)||(10659204-10659280)
[»] chr4 (3 HSPs)
chr4 (55-105)||(1745414-1745464)
chr4 (77-120)||(25100320-25100363)
chr4 (77-114)||(53813977-53814014)
[»] chr2 (2 HSPs)
chr2 (43-123)||(39228859-39228939)
chr2 (49-98)||(35114590-35114639)
[»] chr6 (2 HSPs)
chr6 (43-98)||(29032684-29032739)
chr6 (43-97)||(3008850-3008904)
[»] chr3 (1 HSPs)
chr3 (74-119)||(51663994-51664039)
[»] chr7 (1 HSPs)
chr7 (77-105)||(11203359-11203387)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 11871506 - 11871192
Alignment:
Q  13 catcaagaataaaagctctttcgagaaaacaac----------tcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaaacgaa 102  Q
    |||||||||||||||||||||||||||||||||          ||||||||||| ||||||  |||||||  ||||||||||||||| ||||||||||||    
T  11871506 catcaagaataaaagctctttcgagaaaacaacgcgtaagaactcagatcatggtatgagttcagtacgcccgtaaccagaccctttcgggttaaacgaa 11871407  T
Q  103 ccagattctttcaggtttttgtatcagaccctttcatgtttacgtaactgaagcaccgtaaaaaaccaatgcacggtacattaacaaccaaagcgaacag 202  Q
     ||||||||||| |||||||||| |||||||||||| ||||||     |||| || ||||||||||||| ||||||||||||||||||||||||||| ||    
T  11871406 tcagattctttcgggtttttgtaacagaccctttcaggtttac-----tgaaccatcgtaaaaaaccaacgcacggtacattaacaaccaaagcgaatag 11871312  T
Q  203 gaacaccaaaattgccccaagaccaccgtcgtgaaggcggcgaatcggaaaccaagaaatcagcagatctccaaacatcagaaaggaaccagaaatcaaa 302  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11871311 gaacaccaaaacttccccaagaccaccgtcgtaaaggcggcgaatcggaaaccaagaaatcagcagatctccaaacatcagaaaggaaccagaaatcaaa 11871212  T
Q  303 ggctttaaactgtgatgatg 322  Q
    ||||||||||||||| ||||    
T  11871211 ggctttaaactgtgaggatg 11871192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 14393130 - 14393023
Alignment:
Q  198 aacaggaacaccaaaattgccccaagaccaccgtcgtgaaggcggcgaatcggaaaccaagaaatcagcagatctccaaacatcagaaaggaaccagaaa 297  Q
    ||||| ||||||||||   |||||||||||  | |||||| |||||||||||||| |||||||||| ||||||||| | | |||  |||||||| |||||    
T  14393130 aacagaaacaccaaaacaaccccaagaccattggcgtgaaagcggcgaatcggaagccaagaaatctgcagatctcaacagatcttaaaggaactagaaa 14393031  T
Q  298 tcaaaggc 305  Q
    ||||||||    
T  14393030 tcaaaggc 14393023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 18628988 - 18629098
Alignment:
Q  55 gggatgagtctagtacgctagtaaccagacccttttgggttaaacgaaccagattctttcaggtttttgtatcagaccctttcatgtttacgtaactgaa 154  Q
    |||||||||| | ||||  ||||||||||||||||   |||||||||||||||   |||   ||||||||| |||||||||||  ||||||||||| |||    
T  18628988 gggatgagtccaatacgtcagtaaccagaccctttcaagttaaacgaaccagaccattttgagtttttgtaacagaccctttcgggtttacgtaaccgaa 18629087  T
Q  155 gcaccgtaaaa 165  Q
     ||||| ||||    
T  18629088 ccaccgcaaaa 18629098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 26762280 - 26762241
Alignment:
Q  68 tacgctagtaaccagacccttttgggttaaacgaaccaga 107  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  26762280 tacgttagtaaccagaccctttcgggttaaacgaaccaga 26762241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 16219162 - 16219100
Alignment:
Q  43 aactcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaaacgaacca 105  Q
    |||||||||||  ||||||||||| |||| || ||  |||||||||||||||||| |||||||    
T  16219162 aactcagatcaaaggatgagtctaatacgttactagtcagacccttttgggttaatcgaacca 16219100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 18650452 - 18650534
Alignment:
Q  43 aactcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaaacgaaccagattctttcaggtttttgta 125  Q
    |||| |||||| |||||||||| | ||||  |||||||| ||||||  ||||||||||||||| |  ||||| ||||||||||    
T  18650452 aactaagatcaagggatgagtccaatacgtcagtaaccatacccttccgggttaaacgaaccacaccctttcgggtttttgta 18650534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 19757796 - 19757735
Alignment:
Q  44 actcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaaacgaacca 105  Q
    ||||||||| ||||||||||| | |||| ||| ||| ||||||||| ||||||||| |||||    
T  19757796 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcgggttaaacaaacca 19757735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 41566222 - 41566168
Alignment:
Q  43 aactcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaa 97  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  41566222 aactcagatcgtgggatgagtctaatacgttagtaaccagacccttatgggttaa 41566168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 1029745 - 1029808
Alignment:
Q  43 aactcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaaacgaaccaga 107  Q
    |||||||||| ||||||||||| | |||| |||||| |||||||||| |||||||  ||||||||    
T  1029745 aactcagatcgtgggatgagtccaatacgttagtaa-cagaccctttcgggttaatagaaccaga 1029808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 10659204 - 10659280
Alignment:
Q  43 aactcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaaacgaaccagattctttcaggtt 119  Q
    ||||||||||  |||||||||| | ||||  || |||||||| ||||  ||||||||||||||||| ||||| ||||    
T  10659204 aactcagatcgagggatgagtccaatacgtcagcaaccagactctttcaggttaaacgaaccagatcctttcgggtt 10659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 1745464 - 1745414
Alignment:
Q  55 gggatgagtctagtacgctagtaaccagacccttttgggttaaacgaacca 105  Q
    |||||||||| | |||| ||||||||||||||||| |||||||||||||||    
T  1745464 gggatgagtccaatacgttagtaaccagaccctttcgggttaaacgaacca 1745414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 25100363 - 25100320
Alignment:
Q  77 aaccagacccttttgggttaaacgaaccagattctttcaggttt 120  Q
    |||||||||||||||||||||||||||||||  ||||| |||||    
T  25100363 aaccagacccttttgggttaaacgaaccagaccctttcgggttt 25100320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 53813977 - 53814014
Alignment:
Q  77 aaccagacccttttgggttaaacgaaccagattctttc 114  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  53813977 aaccagaccctttcgggttaaacgaaccagactctttc 53814014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 39228939 - 39228859
Alignment:
Q  43 aactcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaaacgaaccagattctttcaggtttttg 123  Q
    ||||||||||  |||||||||| | |||| ||||||||||| ||||| |||||||  |||||| |  ||||||||||||||    
T  39228939 aactcagatcgagggatgagtcgaatacgttagtaaccagaacctttcgggttaacagaaccatagcctttcaggtttttg 39228859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 35114590 - 35114639
Alignment:
Q  49 gatcatgggatgagtctagtacgctagtaaccagacccttttgggttaaa 98  Q
    ||||| |||||||||||| ||||  | |||||||||||||||||||||||    
T  35114590 gatcaagggatgagtctaatacgtcaataaccagacccttttgggttaaa 35114639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 29032739 - 29032684
Alignment:
Q  43 aactcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaaa 98  Q
    ||||||||||  |||||||||| | |||| ||||||||||||| ||||||||||||    
T  29032739 aactcagatcgagggatgagtccaatacgttagtaaccagaccattttgggttaaa 29032684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 3008850 - 3008904
Alignment:
Q  43 aactcagatcatgggatgagtctagtacgctagtaaccagacccttttgggttaa 97  Q
    ||||||||||   ||||||||||| |||| ||||||||||||||||| |||||||    
T  3008850 aactcagatcgaaggatgagtctaatacgttagtaaccagaccctttcgggttaa 3008904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 51663994 - 51664039
Alignment:
Q  74 agtaaccagacccttttgggttaaacgaaccagattctttcaggtt 119  Q
    |||||||||||||||| ||||||| ||||||||| |||||| ||||    
T  51663994 agtaaccagaccctttcgggttaatcgaaccagactctttcgggtt 51664039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 11203359 - 11203387
Alignment:
Q  77 aaccagacccttttgggttaaacgaacca 105  Q
    |||||||||||||||||||||||||||||    
T  11203359 aaccagacccttttgggttaaacgaacca 11203387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University