View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6340_low_2 (Length: 667)
Name: NF6340_low_2
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 616; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 19 - 654
Target Start/End: Complemental strand, 49563115 - 49562480
Alignment:
| Q |
19 |
aaaccctcgtttccttcgtgtaagcctcaacaaacacattatccctacttttgaattggtaagaagtttctgtccctctgataagaaagctattgattgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49563115 |
aaaccctcgtttccttcgtgtaagcctcaacaaacacattatccctacttttgaattggtaagaagtttctgtccctctgataagaaagctattgattgt |
49563016 |
T |
|
| Q |
119 |
gtaattgcatttcctgctacaattagtgatggtcgcatgaaacccaatttgaaattcttgcttgatactggtgtcactcgttcaagtatttaccgtttac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49563015 |
gtaattgcatttcctgctacaattagtgatggtcgcatgaaacccaatttgaaattcttgcttgatactggtgtcactcgttcaagtatttaccgtttac |
49562916 |
T |
|
| Q |
219 |
ttactagcagaccttctgtaattttttcatctgttttgaggacggctgtggaggagattaaggaattagggtttcatccttctagttacaatttttgtgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49562915 |
ttactagcagaccttctgtaattttttcatctgttttgaggacggctgtggaggagattaaggaattagggtttcatccttctagttacaatttttgtgt |
49562816 |
T |
|
| Q |
319 |
cgcattgttggccaaaaaggctatcactaaatcccaatgggatgccaaagtcgatgccttgaagagctggggttattctgaagatgcaattttaactgca |
418 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49562815 |
cgcattgttggccaaaaaggccatcactaaatcccaatgggattccaaagtcgatgccttgaagagctggggttattctgaagatgcaattttaactgca |
49562716 |
T |
|
| Q |
419 |
tttaaaagaggccctaaccttatgctacggtctttggacaaactcaatgcagtgatgcgtttttggatccaacaacttggttgggatcctttattgctcc |
518 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49562715 |
tttaaaagagggcctaaccttatgctacggtctttggacaaactcaatgcggtgatgcgtttttggatccaacaacttggttgggatcctttattgctcc |
49562616 |
T |
|
| Q |
519 |
tggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaagggcttcggttatccggtatcttctttccaaaggtttgatgaagaagga |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49562615 |
tggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaagggcttcagttatccggtatcttctttccaaaggtttgatgaagaagga |
49562516 |
T |
|
| Q |
619 |
tgctagcttaactgcaccattttatttgactgatga |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
49562515 |
tgctagcttaactgcaccattttatttgactgatga |
49562480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 22 - 628
Target Start/End: Complemental strand, 49558949 - 49558344
Alignment:
| Q |
22 |
ccctcgtttccttcgtgtaagcctcaacaaacacattatccctacttttgaattggtaagaagtttctgtccctctgataagaaagctattgattgtgta |
121 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||||||||| ||| | || |
|
|
| T |
49558949 |
ccctcgttttgttcgtgtaagcctcgacaaacacattatccctgcttttgaattggtaaggagtttctgcccctctgataaaaaagctattcattctata |
49558850 |
T |
|
| Q |
122 |
attgcatttcctgctacaattagtgatggtcgcatgaaacccaatttgaaattcttgcttgatactggtgtcactcgttcaagtatttaccgtttactta |
221 |
Q |
| |
|
|| || | |||| || | ||||| ||| |||||||||||| ||| ||||||| ||||||||| |||| ||||| |||||||||||||||||| |||| |
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|
| T |
49558849 |
atcgcttgtcctacttccattagcgatcctcgcatgaaaccaaatgtgaaatttttgcttgattttggtctcactgcttcaagtatttaccgtttgctta |
49558750 |
T |
|
| Q |
222 |
ctagcagaccttctgtaattttttcatctgttttgaggacggctgtggaggagattaaggaattagggtttcatccttctagttacaatttttgtgtcgc |
321 |
Q |
| |
|
|||||||||||||| |||| | | | || ||||| | |||| |||||||||||||||||||||||||||| ||||| | ||||| |||||||| || |
|
|
| T |
49558749 |
ctagcagaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaattagggtttcaaccttccaaatacaacttttgtgtagc |
49558650 |
T |
|
| Q |
322 |
attgttggccaaaaaggctatcactaaatcccaatgggatgccaaagtcgatgccttgaagagctggggttattctgaagatgcaattttaactgcattt |
421 |
Q |
| |
|
||| |||||||||| |||| |||| |||||||| |||||||| ||| | |||| ||||||||| ||||||| ||||||||||| ||||| | ||||||| |
|
|
| T |
49558649 |
attattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagttggggttgttctgaagatgatatttttaatgcattt |
49558550 |
T |
|
| Q |
422 |
a-aaagaggccctaaccttatgctacggtctttggacaaactcaatgcagtgatgcgtttttggatccaacaacttggttgggatcctttattgctcctg |
520 |
Q |
| |
|
| ||| ||| ||| ||||| |||||||| |||||||||||| |||||||| | |||||| || | | ||||| ||||||||||| ||||| | |
|
|
| T |
49558549 |
aggaagcaaccc-aactttatgttacggtctccagacaaactcaat-cagtgatgagattttgggtcgatgagcttgggtgggatcctttgctgctctta |
49558452 |
T |
|
| Q |
521 |
gcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaagggcttcggttatccggtatcttctttccaaaggtttgatgaagaaggatg |
620 |
Q |
| |
|
| | ||||| |||| || |||||||||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||| | |
|
|
| T |
49558451 |
actgaaccagcaatttttgggtatagtatagagaaaaggcttattccaagggcttcagttatcaagtatcttctatccaaaggtttgatgaagaagggtt |
49558352 |
T |
|
| Q |
621 |
ctagctta |
628 |
Q |
| |
|
|||||||| |
|
|
| T |
49558351 |
ctagctta |
49558344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 54 - 654
Target Start/End: Original strand, 49904350 - 49904950
Alignment:
| Q |
54 |
acattatccctacttttgaattggtaagaagtttctgtccctctgataagaaagctattgattgtgtaattgcattt--cctgctacaattagtgatggt |
151 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| |||||| | ||||||||| || ||||| ||||| || || ||||| ||||| | |
|
|
| T |
49904350 |
acataatcccttcttttgaattggtaagaagtttctgtccttctgatcataaagctattacttcagtaat--catttgcccctcttcaatttgtgattct |
49904447 |
T |
|
| Q |
152 |
cgcatgaaacccaatttgaaattcttgcttgatactggtgtcactcgttcaagtatttaccgtttacttactagcagaccttctgtaattttttcatctg |
251 |
Q |
| |
|
||| | ||||| ||| | |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| | || ||| |
|
|
| T |
49904448 |
cgctttaaaccaaatcttcaatttttgcttgattttggtgtcactcgttcaagtatttaccgtttgcttactagcagaccttccacaatatgttgtactg |
49904547 |
T |
|
| Q |
252 |
ttttgaggacggctgtggaggagattaaggaattagggtttcatccttctagttacaatttttgtgtcgcattgttggccaaaaaggctatcactaaatc |
351 |
Q |
| |
|
||||| | |||| |||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||| |||||||||| |||| |||| ||||| |
|
|
| T |
49904548 |
atttgaaaaaggctttggaggagattaaggaattagggtttcaaccttccaaatacaatttttgtgtagcattattggccaaaagggctgtcaccaaatc |
49904647 |
T |
|
| Q |
352 |
ccaatgggatgccaaagtcgatgccttgaagagctggggttattctgaagatgcaattttaactgcattta-aaagaggccctaaccttatgctacggtc |
450 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||| |||| | |||||||| ||| ||| ||| |||||||| |||| |
|
|
| T |
49904648 |
ccaatgggatgccaaagttgatgtcttgaagagttggggttgttctgaagatgcagtttttaatgcatttaggaagcaaccc-aactttatgctaaggtc |
49904746 |
T |
|
| Q |
451 |
tttggacaaactcaatgcagtgatgcgtttttggatccaacaacttggttgggatcctttattgctcctggcagcaccagagcttttcggacttagtata |
550 |
Q |
| |
|
| || |||||||||||||||||| |||||||| || | | |||||||||||||||| ||||| | || | || |||||| ||| |||||| |
|
|
| T |
49904747 |
tccagataaactcaatgcagtgatgagtttttgggtcgaggagcttggttgggatccttcgctgctcttagctgagccgacgctttttggatacagtata |
49904846 |
T |
|
| Q |
551 |
gagaaaaggcttagtccaagggcttcggttatccggtatcttctttccaaaggtttgatgaagaaggatgctagcttaactgcaccattttatttgactg |
650 |
Q |
| |
|
|||||||||||||||||||||| || || || ||||||||| ||||||||||||||||| ||| |||||||||| | ||||||||||| |||||| |
|
|
| T |
49904847 |
cagaaaaggcttagtccaagggcatcaattgtcaagtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttatctgactg |
49904946 |
T |
|
| Q |
651 |
atga |
654 |
Q |
| |
|
|||| |
|
|
| T |
49904947 |
atga |
49904950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 550 - 647
Target Start/End: Complemental strand, 49571432 - 49571335
Alignment:
| Q |
550 |
agagaaaaggcttagtccaagggcttcggttatccggtatcttctttccaaaggtttgatgaagaaggatgctagcttaactgcaccattttatttga |
647 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49571432 |
agagaaaaggcttagtccaagggcttctgttatccagtatcttctttccaaaggtttgatgaagaaggatgctagcttaactgcaccattttatttga |
49571335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 438 - 616
Target Start/End: Original strand, 49905402 - 49905580
Alignment:
| Q |
438 |
ttatgctacggtctttggacaaactcaatgcagtgatgcgtttttggatccaacaacttggttgggatcctttattgctcctggcagcaccagagctttt |
537 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||| |||||||||| |||| | ||||||||||||||| ||||| || ||| ||||| ||| |
|
|
| T |
49905402 |
ttatgctacggtctagggacaaattcaatgcggtgatgcatttttggatcaaacagcatggttgggatcctttcgtgctcttgaaagctccagatatttc |
49905501 |
T |
|
| Q |
538 |
cggacttagtatagagaaaaggcttagtccaagggcttcggttatccggtatcttctttccaaaggtttgatgaagaag |
616 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||||||||| | ||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
49905502 |
cggatttagtctagagaaaaggcttattccaagggctactgttatccggtatcttctctctaaaggtttgatgaagaag |
49905580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 9421406 - 9421327
Alignment:
| Q |
305 |
tacaatttttgtgtcgcattgttggccaaaaaggctatcactaaatcccaatgggatgccaaagtcgatgccttgaagag |
384 |
Q |
| |
|
|||||||||||||| ||||| | ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9421406 |
tacaatttttgtgtggcattacccgacaaaagggctatcaccaaatcccaatgggatgccaaagttgatgccttgaagag |
9421327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 9441452 - 9441372
Alignment:
| Q |
304 |
ttacaatttttgtgtcgcattgttggccaaaaaggctatcactaaatcccaatgggatgccaaagtcgatgccttgaagag |
384 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||| | |||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
9441452 |
ttacaatttttgtgtggcattaccggccaaaagggctatctccaaatcccaatgggacgccaaagttgatgcctcgaagag |
9441372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 41483541 - 41483498
Alignment:
| Q |
50 |
aaacacattatccctacttttgaattggtaagaagtttctgtcc |
93 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
41483541 |
aaacacattatccctgcttttgaattggtaagaagtttatgtcc |
41483498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 584
Target Start/End: Original strand, 5669574 - 5669687
Alignment:
| Q |
471 |
tgatgcgtttttggatccaacaacttggttgggatcctttattgctcctggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaag |
570 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||||| ||||||| |||||| || |||||| || | || || ||||| ||| | | |||||| |
|
|
| T |
5669574 |
tgatacgtttttggatagaacaacttggttggaatcctttagtgctcctttaagcaccggatcttttcagattcagcattgagaataggttaattccaag |
5669673 |
T |
|
| Q |
571 |
ggcttcggttatcc |
584 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
5669674 |
ggcttctgttatcc |
5669687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 584
Target Start/End: Original strand, 5693245 - 5693358
Alignment:
| Q |
471 |
tgatgcgtttttggatccaacaacttggttgggatcctttattgctcctggcagcaccagagcttttcggacttagtatagagaaaaggcttagtccaag |
570 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||||| ||||||| |||||| || |||||| || | || || ||||| ||| | | |||||| |
|
|
| T |
5693245 |
tgatacgtttttggatagaacaacttggttggaatcctttagtgctcctttaagcaccggatcttttcagattcagcattgagaataggttaattccaag |
5693344 |
T |
|
| Q |
571 |
ggcttcggttatcc |
584 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
5693345 |
ggcttctgttatcc |
5693358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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