View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_20 (Length: 318)
Name: NF6340_low_20
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 35928008 - 35928300
Alignment:
| Q |
18 |
agaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaactggtaagttatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928008 |
agaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaactggtaagttatt |
35928107 |
T |
|
| Q |
118 |
catgtctaagaataaatgcatcataagaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgttttgccg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35928108 |
catgtctaagaataaatgcatcataagaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatattggttacggtatagtgttttgcca |
35928207 |
T |
|
| Q |
218 |
tcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtaagtttcaaacatgatgatgtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
35928208 |
tcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtaagtttcaaacattatgttgtc |
35928300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 35910612 - 35910908
Alignment:
| Q |
22 |
gttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaac--tggtaagttattca |
119 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||||||||| | ||||||| |||||| |
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| T |
35910612 |
gttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatgatataagttggtaagatattca |
35910711 |
T |
|
| Q |
120 |
tgtctaagaataaatgcatcataagaaacaatttcattctatcgatg---------attgtttcaccttcagtccaagcatatgggttacggtatagtgt |
210 |
Q |
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| T |
35910712 |
tgtctcagaa---atgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgt |
35910808 |
T |
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| Q |
211 |
tttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtaagtttcaaacatgatgatgtc |
310 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
35910809 |
tttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtc |
35910908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 24 - 310
Target Start/End: Original strand, 35921421 - 35921706
Alignment:
| Q |
24 |
tgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatga--taaactggtaagttattcatg |
121 |
Q |
| |
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||||||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| |||||||||||||||| || ||| | |||| || ||||| |
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| T |
35921421 |
tgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccactgcatatttcataaggagttaagtttctaagataatcatg |
35921520 |
T |
|
| Q |
122 |
tctaagaataaatgcatcataagaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgttttgccgtcag |
221 |
Q |
| |
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||| |||| ||||||||||| |||| || || |||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||| |||| |
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| T |
35921521 |
tctcagaa---atgcatcataaataacacattagttatatcgatgatcatctcaccttcattccaagcatatgggttacggtataatgttttgccatcag |
35921617 |
T |
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| Q |
222 |
agttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtaagtttcaaacatgatgatgtc |
310 |
Q |
| |
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|||||| |||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||| |
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| T |
35921618 |
agttgactctgaagggtccgagctcctcaaaggctccatatcccagtgaggaacaaccaggtcctgtgagtttcaaacattatgatgtc |
35921706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 35934821 - 35935104
Alignment:
| Q |
18 |
agaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatat--ttcataatgataaactggtaagtta |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||||||||||| |||| || | |
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| T |
35934821 |
agaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcatatattttataatgataaattggttagatg |
35934920 |
T |
|
| Q |
116 |
ttcatgtctaagaataaatgcatcata-agaaacaatttcattctatcgat---gattgtttcaccttcagtccaagcatatgggttacggtatagtgtt |
211 |
Q |
| |
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||||||||| ||||||||| || ||||| |||| || ||||||| |||||| ||||||| ||||||||||| |||||||||||| |||| |
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| T |
35934921 |
ttcatgtctct---taaatgcataatggagaaaacatttaatcatatcgattatgattgtcataccttcactccaagcatattggttacggtataatgtt |
35935017 |
T |
|
| Q |
212 |
ttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtaagtttcaaa |
298 |
Q |
| |
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|| || |||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
35935018 |
tttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccaggtcctgtgtgtttcaaa |
35935104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 35940388 - 35940685
Alignment:
| Q |
22 |
gttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaac--tggtaagttattca |
119 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||| || ||||| ||||| || || ||||||||||||||||||||| | | ||||| |||||| |
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| T |
35940388 |
gttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcataatgatataagtttgtaagatattca |
35940487 |
T |
|
| Q |
120 |
tgtctaagaataaatgcatcataa-gaaacaatttcattctatcgatg---------attgtttcaccttcagtccaagcatatgggttacggtatagtg |
209 |
Q |
| |
|
||||| |||| ||||||||||| |||||||| | ||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35940488 |
tgtctcagaa---atgcatcataaagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtg |
35940584 |
T |
|
| Q |
210 |
ttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtaagtttcaaacatgatgatgt |
309 |
Q |
| |
|
|||| || |||||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||| ||| ||| |
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| T |
35940585 |
tttttccatcagagttgactctgaagggtccgagctcctgaaaggctccatacccaagtgaagaacagccaggtcctgtgtggttcaaacattatgttgt |
35940684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 35915047 - 35915335
Alignment:
| Q |
22 |
gttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaac--tggtaagttattca |
119 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||| |||| | ||||||| || ||| |
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| T |
35915047 |
gttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgcatatttcataaggatataagttggtaagataatca |
35915146 |
T |
|
| Q |
120 |
tgtctaagaataaatgcatcataa-gaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgttttgccgt |
218 |
Q |
| |
|
||||| || ||||||||||| |||| || || || ||| ||||||||| ||||||||| |||||||||||||||| ||||||| |||||| || | |
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|
| T |
35915147 |
tgtctcaggc---atgcatcataaagaaataaattagttatattgatgattgtctcaccttcattccaagcatatgggttgcggtataatgtttttccat |
35915243 |
T |
|
| Q |
219 |
cagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtaagtttcaaacatgatgatgtc |
310 |
Q |
| |
|
|||| |||| |||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||| |||| |
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| T |
35915244 |
cagaattgactctgaagggtccgagctcttgaaaggctccatatcccagtgaggaacaaccaggtcctgcgagtttcaaacattatgttgtc |
35915335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 6208979 - 6209039
Alignment:
| Q |
26 |
tgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgc |
86 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || | |||||||| ||||| |
|
|
| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaagataacatttgccactgc |
6209039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 6178241 - 6178277
Alignment:
| Q |
28 |
tttgaataggaaaatcccactcctgctggagactcta |
64 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
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|
| T |
6178241 |
tttgaataagaaaatccaactcctgctggagactcta |
6178277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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