View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_22 (Length: 300)
Name: NF6340_low_22
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 7005896 - 7005637
Alignment:
| Q |
20 |
attcaacctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaatctagccaactggcggattggttggtgttcggttcaaccag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7005896 |
attcaacctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaacctagccaactggcggattggttggtgttcggttcaaccag |
7005797 |
T |
|
| Q |
120 |
ttgtactcaccagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatcta |
219 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7005796 |
ttgtactcaccagttcaatccaatttttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatcta |
7005697 |
T |
|
| Q |
220 |
caatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactgcat |
279 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7005696 |
caatggagtagtttagattccttatccaagcttgagtagagatgaaaggaacaactgcat |
7005637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 7058170 - 7057912
Alignment:
| Q |
27 |
ctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaatctagccaactggcggattggttggtgttcggttcaaccagttgtact |
126 |
Q |
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|||||||||||||| |||| |||| || ||||||||||||||| |||||||||| ||||| |||||| || | || ||||||||||| |||| || |
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| T |
7058170 |
ctggttcgattgtggttcagtccagttcaatgggactatgataaaactggaatcaagccagctggcgaatatgctgactttcggttcaactggttgaacc |
7058071 |
T |
|
| Q |
127 |
caccagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatgga |
226 |
Q |
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| T |
7058070 |
ggcctgttcaatctaatttttaaaacattgatatgaaggttgatgcttaccctcccacttggccatttacaaaccatgacctccaatcatctacaatgga |
7057971 |
T |
|
| Q |
227 |
gtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactgcatgatgat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
7057970 |
gtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactacatcatgat |
7057912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 7042163 - 7041895
Alignment:
| Q |
21 |
ttcaacctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaatctagccaactggcggattggttggtgttcggttcaaccagt |
120 |
Q |
| |
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|||||| ||||||| |||||||||| |||| || || |||||||||| | |||||||| |||||| ||||| ||||| || ||||||||||||||| |
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| T |
7042163 |
ttcaacttggttcggttgtgattcattccagttcaacaggactatgattaatctggaatcaagccaattggcgaattggcaggctttcggttcaaccagt |
7042064 |
T |
|
| Q |
121 |
tgtactcac----cagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcat |
216 |
Q |
| |
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|| || || |||||| || ||| || |||||||||||| || |||| | ||||||||||||||||| | |||||||||||||||||||| |||| |
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| T |
7042063 |
tgaaccgacggaccagttcaatttaattttcaaaacattgatatgaagtttcatacttaccctcccacttggccatttacaaaccatggcctccagtcat |
7041964 |
T |
|
| Q |
217 |
ctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactgcatgatgat |
285 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |
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| T |
7041963 |
ctacaatggagtagtttagatcccttatccaagcttgagtagacatgaaaggaacaactgcatcatgat |
7041895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 7049259 - 7049007
Alignment:
| Q |
21 |
ttcaacctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaatctagccaactggcggattggttggtgttcggttcaaccagt |
120 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| || || |||||||||||| |||||||||| |||||||||||| || | || ||||||||||| || |
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| T |
7049259 |
ttcaacctagttcgattgtggttcagtccagttcaacgggactatgataaaactggaatcaagccaactggcgaatatgctgactttcggttcaactggt |
7049160 |
T |
|
| Q |
121 |
tgtactcaccagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatctac |
220 |
Q |
| |
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|| || |||||||| ||| ||| ||||||||||||||| || | || | |||||||| |||||||| | |||||| |||||| ||||||||| |||| |
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| T |
7049159 |
tgaaccgaccagttcaatctaatttttaaaacattgatatgaaggttgatgcttaccctgccacttggccatttacataccatgacctccaatcctctat |
7049060 |
T |
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| Q |
221 |
aatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaacaa |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7049059 |
aatggagtagtttagatcccttatccatgcttgagtagaccggaaaggaacaa |
7049007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 7015536 - 7015429
Alignment:
| Q |
172 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
271 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7015536 |
cttaccctcctacttggccatttacaaaccatggcctccaatcatctacaatggagtagtttagattccttatccatgcttgagtagagatgaaaggaac |
7015437 |
T |
|
| Q |
272 |
aactgcat |
279 |
Q |
| |
|
|||||||| |
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| T |
7015436 |
aactgcat |
7015429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 172 - 290
Target Start/End: Complemental strand, 6996622 - 6996504
Alignment:
| Q |
172 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
271 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
6996622 |
cttaccctcccacttgaccgtttacaaaccatggcctccaatcatctacaatggagtagtttagattccttatccaagcttgagtagacatgaaaggaac |
6996523 |
T |
|
| Q |
272 |
aactgcatgatgatgtcca |
290 |
Q |
| |
|
|||||||| ||||| |||| |
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| T |
6996522 |
aactgcatcatgatctcca |
6996504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 7022282 - 7022175
Alignment:
| Q |
172 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
271 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7022282 |
cttaccctcccacttgaccatttacaaaccatggcctccaatcatctacagtggagtaatttagatcccttatccatgcttgagtagacatgaaaggaac |
7022183 |
T |
|
| Q |
272 |
aactgcat |
279 |
Q |
| |
|
|| ||||| |
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|
| T |
7022182 |
aattgcat |
7022175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 7029016 - 7028913
Alignment:
| Q |
172 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
271 |
Q |
| |
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|||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7029016 |
cttaccctgccacttgaccatttacaaaccatgacctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaac |
7028917 |
T |
|
| Q |
272 |
aact |
275 |
Q |
| |
|
|||| |
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|
| T |
7028916 |
aact |
7028913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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