View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_23 (Length: 296)
Name: NF6340_low_23
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 817930 - 817665
Alignment:
| Q |
14 |
atatataaacgcatgggcatgtagtagagccaatgagcaaattatcaaagcatacattattaattatgcgtattaaatcaacaaatcttcttgttgttgg |
113 |
Q |
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| T |
817930 |
atatataaaagcatggtcatgtagtagagccaatgagcaaattatcaaagcatacattattaattatgcgtattaaatcaacaaatcctcttgttgttgg |
817831 |
T |
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| Q |
114 |
tggtgtaattggagatgttttggatccctttacaagttcagtgtctttgagagtcgtttatgaaaataacaaagaagtcatcaacagtggtgagctcaaa |
213 |
Q |
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| T |
817830 |
tggtgtaattggagaggttttggacccctttacaagttcagtgtctttgagagtcgtttatgacaataacaaagaagtcatcaacagtggtgagctcaaa |
817731 |
T |
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| Q |
214 |
ccctctcaaataatcaactcaccaagagttcaagttggtggaaatgacctcaggaccctgtatact |
279 |
Q |
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| T |
817730 |
ccctcccaaataatcaactcaccaagagttcaagttggtggaaatgacctcaggaccctgtatact |
817665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 65 - 269
Target Start/End: Complemental strand, 776597 - 776393
Alignment:
| Q |
65 |
atacattattaattatgcgtattaaatcaacaaatcttcttgttgttggtggtgtaattggagatgttttggatccctttacaagttcagtgtctttgag |
164 |
Q |
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| T |
776597 |
atacattattaattatgcgtattaaatcaatgaaccctcttgtggtttgtggtgtaattggagatgttttggatccctttacaaattcagtgtctttgag |
776498 |
T |
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| Q |
165 |
agtcgtttatgaaaataacaaagaagtcatcaacagtggtgagctcaaaccctctcaaataatcaactcaccaagagttcaagttggtggaaatgacctc |
264 |
Q |
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| T |
776497 |
ggtcgtttatgaaaataacaaagaagtcagcaacagtggcgagctgaaaccctcccaaatagtcaatccaccaagagttcaagttggtggaaatgacctc |
776398 |
T |
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| Q |
265 |
aggac |
269 |
Q |
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||||| |
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| T |
776397 |
aggac |
776393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 8458718 - 8458839
Alignment:
| Q |
60 |
aaagcatacattattaattatgcgtattaaatcaacaaatcttcttgttgttggtggtgtaattggagatgttttggatccctttacaagttcagtgtct |
159 |
Q |
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| T |
8458718 |
aaagcatacattgttaattatgcgtattaaatcattaactcctcttgtggtttgtggtgtaattggagatgttttgaatccctttacaaattcagtgtct |
8458817 |
T |
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| Q |
160 |
ttgagagtcgtttatgaaaata |
181 |
Q |
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| T |
8458818 |
ttgaggattgtttatgacaata |
8458839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 776708 - 776651
Alignment:
| Q |
14 |
atatataaacgcatgggcatgtagtagagccaatgagcaaattatcaaagcatacatt |
71 |
Q |
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||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||| |
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| T |
776708 |
atatataaaagcatggtcatgtagtagagccaatgagcaagttatcagagcatacatt |
776651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 8458640 - 8458701
Alignment:
| Q |
14 |
atatataaacgcatgggcatgtagtagagccaatgagcaaattatcaaagcatacattatta |
75 |
Q |
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||||||||| ||||| ||||||||||| |||||||||||| ||||||||||| | ||||||| |
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| T |
8458640 |
atatataaaagcatgtgcatgtagtagggccaatgagcaagttatcaaagcacatattatta |
8458701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 8458854 - 8458890
Alignment:
| Q |
233 |
caccaagagttcaagttggtggaaatgacctcaggac |
269 |
Q |
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| T |
8458854 |
caccaagagttcaagttggtggaaatgacctcaggac |
8458890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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