View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_26 (Length: 255)
Name: NF6340_low_26
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_26 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 161752 - 161508
Alignment:
| Q |
13 |
gcagagacactatagtatataccagtgggatttcgaactctaaattacccacttattcactttaagggtgaatcttaacaactatacttagaccaaaata |
112 |
Q |
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| T |
161752 |
gcagagacactatagtatataccagtgggatttcgaactctaaattacccacttattcactttaagggtgaatcttaacaactatacttagaccaaaata |
161653 |
T |
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| Q |
113 |
aataaatacacataacactca--tcaatctagttatgataataatccaaaccacgaattatacattttcaagtttctctactagaagagaatcttggcaa |
210 |
Q |
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| T |
161652 |
aataaatacacataacacacacatcaatctagttatgataataatccaaaccacgaattatacattttcaagtttctctactagaagagaatcttggcaa |
161553 |
T |
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| Q |
211 |
gacgtacaaagttgaatgcagtgtaaacaagaaaagcaatcccaa |
255 |
Q |
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| T |
161552 |
gacgtacaaagttgaatgcagtgtaaacaagaaaagcaatcccaa |
161508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 127 - 255
Target Start/End: Complemental strand, 153159 - 153031
Alignment:
| Q |
127 |
acactcatcaatctagttatgataataatccaaaccacgaattatacattttcaagtttctctactagaagagaatcttggcaagacgtacaaagttgaa |
226 |
Q |
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| T |
153159 |
acacacataaatctagttatgataataattcaaaccatgaattatacattttcaagtttgtctagtagaaaagaatcttggcaagacgtacaaagttgaa |
153060 |
T |
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| Q |
227 |
tgcagtgtaaacaagaaaagcaatcccaa |
255 |
Q |
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| T |
153059 |
tgcagtgtaaacaagaaaagcaatcccaa |
153031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 33687468 - 33687504
Alignment:
| Q |
44 |
ttcgaactctaaattacccacttattcactttaaggg |
80 |
Q |
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| T |
33687468 |
ttcgaactctaaattccccacttattcaccttaaggg |
33687504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 33704474 - 33704510
Alignment:
| Q |
44 |
ttcgaactctaaattacccacttattcactttaaggg |
80 |
Q |
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| T |
33704474 |
ttcgaactctaaattccccacttattcaccttaaggg |
33704510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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