View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_28 (Length: 251)
Name: NF6340_low_28
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 13275370 - 13275152
Alignment:
| Q |
20 |
ttctttattttgtttagaaacttttaattggtttagagccagctttgttattttctgtcaaagcatataaaccttcaaaagattaaggtttaaaatgatt |
119 |
Q |
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| T |
13275370 |
ttctttattttgtttagaaacttttaattggtttagatccagctttgttattttctgtcaaagcatataaaccttcaaaagattaaggtttaaaatgatt |
13275271 |
T |
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| Q |
120 |
tgtaaacatgttatggatgtaatatacccttaaccctaaggaaactttaactcaaaactaaatttttgctcccttttttggtgcgtttcatgctgaaaaa |
219 |
Q |
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| T |
13275270 |
tgtaaacatgttatggatgtaatatacccttaaccctaaggaaactttaactcaaaactaaatttttgctccct-ttttcgtgcgtttcatgctgaaaaa |
13275172 |
T |
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| Q |
220 |
tttattataatctgcatatt |
239 |
Q |
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||| |||||||||||||||| |
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| T |
13275171 |
tttcttataatctgcatatt |
13275152 |
T |
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