View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_29 (Length: 248)
Name: NF6340_low_29
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_29 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 161390 - 161159
Alignment:
| Q |
1 |
aagttgaattcaccacaacatgtttacaaagaccattaacaagcattgcaacttctttatcacttcccatttcatgcacaatcacttccttctcgaccaa |
100 |
Q |
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| T |
161390 |
aagttgaattcaccacaacatgtttacaaagaccattaacaagcattgcaacttctttatcacttcccatttcatgcacaatcacttccttctcgaccaa |
161291 |
T |
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| Q |
101 |
caaatcaacatcaacctgtgtatgtataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgatattgacattgttctagggcaatg |
200 |
Q |
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| T |
161290 |
caaatcaacatcaacatgtgtatgtataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgataatgacattgttctagggcaatg |
161191 |
T |
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| Q |
201 |
aggttccttaaaacacattctgttgtgtgatc |
232 |
Q |
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| T |
161190 |
aggttccttaaaacacattctgttgtgtgatc |
161159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 152913 - 152682
Alignment:
| Q |
1 |
aagttgaattcaccacaacatgtttacaaagaccattaacaagcattgcaacttctttatcacttcccatttcatgcacaatcacttccttctcgaccaa |
100 |
Q |
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| T |
152913 |
aagttgaattcacaacaacatgtttgcaaagaccattaacaagcattgcaacttctttgtcacttcccatttcatgcacaatcacttccttctcgaccaa |
152814 |
T |
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| Q |
101 |
caaatcaacatcaacctgtgtatgtataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgatattgacattgttctagggcaatg |
200 |
Q |
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| T |
152813 |
caaatcaacatcaacttgtgtatgtataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgatactgacattgttctagggcaatg |
152714 |
T |
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| Q |
201 |
aggttccttaaaacacattctgttgtgtgatc |
232 |
Q |
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| T |
152713 |
aggttccttagaacgcattctgttgtgtgatc |
152682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 106515 - 106597
Alignment:
| Q |
144 |
gaaacataattgcatatataaggttgttcttgatattgacattgttctagggcaatgaggttccttaaaacacattctgttgt |
226 |
Q |
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| T |
106515 |
gaaacataattgcatatgaaaggttggtttgaataatgacattgttccaaagcaatgaggttcctaagaacacattcagttgt |
106597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 143374 - 143245
Alignment:
| Q |
96 |
accaacaaatcaacatcaacctgtgtatgtataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgatattgacattgttctaggg |
195 |
Q |
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| T |
143374 |
accaacaactcaacatcttcgtgtgtatgaatcaaagaatcaattaaagaaacatagttgcatatgaaaggttgctctgaatagtgacattgttcaaatg |
143275 |
T |
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| Q |
196 |
caatgaggttccttaaaacacattctgttg |
225 |
Q |
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| T |
143274 |
cgattaggttcctaagaacacattctgttg |
143245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 9504 - 9725
Alignment:
| Q |
5 |
tgaattcaccacaacatgtttacaaagaccattaacaagcattgcaacttctttatcacttcccatttcatgcacaatcacttccttctcgaccaacaaa |
104 |
Q |
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| T |
9504 |
tgaattcatcacaatatgtttgcatagaccgttaacaagattcgccaattcctcgtcacttcctagttcgtgcacaatcacttctttctcgaccaacaac |
9603 |
T |
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| Q |
105 |
tcaacatcaacctgtgtatgtataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgatattgacattgttctagggcaatgaggt |
204 |
Q |
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| T |
9604 |
tctgcatcatctttggtgtgaataagagaatcaagaaaagaaacatagttacaaatatagggctcgtctggatagtgacattgctcaaaagccatgaggt |
9703 |
T |
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| Q |
205 |
tccttaaaacacattctgttgt |
226 |
Q |
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| T |
9704 |
tcctaagaacacattcggttgt |
9725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 22958 - 23179
Alignment:
| Q |
5 |
tgaattcaccacaacatgtttacaaagaccattaacaagcattgcaacttctttatcacttcccatttcatgcacaatcacttccttctcgaccaacaaa |
104 |
Q |
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|||||||| ||||| |||||| || ||||| |||||||| | || | ||| | |||||||| | ||| |||||||||||||| |||||||||||||| |
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| T |
22958 |
tgaattcatcacaatatgtttgcatagaccgttaacaagattcgccaattcctcgtcacttcctagttcgtgcacaatcacttctttctcgaccaacaac |
23057 |
T |
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| Q |
105 |
tcaacatcaacctgtgtatgtataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgatattgacattgttctagggcaatgaggt |
204 |
Q |
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| T |
23058 |
tctgcatcatctttggtgtgaataagagaatcaagaaaagaaacatagttacaaatatagggctcgtctggatagtgacattgctcaaaagccatgaggt |
23157 |
T |
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| Q |
205 |
tccttaaaacacattctgttgt |
226 |
Q |
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| T |
23158 |
tcctaagaacacattcggttgt |
23179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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