View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_33 (Length: 234)
Name: NF6340_low_33
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 10284981 - 10284780
Alignment:
| Q |
14 |
atgaactaaaaatgaaagactaagtttgtttcttaaactttaatctcaaatatcaatacaaaaaactaactaagggacatataaatcaaactaggttcac |
113 |
Q |
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| T |
10284981 |
atgaactaaaaa-gagagactacatttgtttcttaaactttaatctcaaatatcaatacaaaaaactaactaagggacatataaatcaaactaggtttat |
10284883 |
T |
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| Q |
114 |
aaaacaaattcaatgaattaattaccgaattaagttcaatctaaattcgtattagttcagtttattaccggttctactcaaagtagatatttccatatag |
213 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10284882 |
aaaacaaattcaatgaattaattatcgaattaagttcaatctaaatttgtgttagttcagttcattaccggttctactcaaagtagatatttccatatag |
10284783 |
T |
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| Q |
214 |
aat |
216 |
Q |
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||| |
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| T |
10284782 |
aat |
10284780 |
T |
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