View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6340_low_4 (Length: 542)

Name: NF6340_low_4
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6340_low_4
NF6340_low_4
[»] chr3 (6 HSPs)
chr3 (18-459)||(52643625-52644066)
chr3 (449-513)||(52644085-52644149)
chr3 (109-198)||(43337261-43337350)
chr3 (389-443)||(49197709-49197763)
chr3 (304-457)||(33819410-33819563)
chr3 (28-198)||(33819669-33819838)
[»] chr7 (6 HSPs)
chr7 (18-457)||(31284974-31285411)
chr7 (18-493)||(36618485-36618960)
chr7 (135-492)||(47218586-47218943)
chr7 (479-513)||(31284941-31284975)
chr7 (389-465)||(16856733-16856809)
chr7 (145-209)||(16856989-16857053)
[»] chr5 (3 HSPs)
chr5 (72-209)||(22822638-22822775)
chr5 (389-465)||(22822382-22822458)
chr5 (109-198)||(10018647-10018735)
[»] chr6 (3 HSPs)
chr6 (387-481)||(8267407-8267501)
chr6 (110-199)||(4085780-4085869)
chr6 (163-240)||(587829-587906)
[»] chr1 (3 HSPs)
chr1 (112-209)||(23461077-23461174)
chr1 (110-199)||(3575381-3575470)
chr1 (389-465)||(23460821-23460897)
[»] chr4 (1 HSPs)
chr4 (389-465)||(19678797-19678873)
[»] chr2 (1 HSPs)
chr2 (410-465)||(38971736-38971791)
[»] scaffold0085 (1 HSPs)
scaffold0085 (388-457)||(47571-47640)


Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 52643625 - 52644066
Alignment:
Q  18 tagtttaggatggattcggctaaatacggatggagctgctaagggagaagatattgcaggatgtggaggagttttgaggggagatagcggtgagtggatt 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52643625 tagtttaggatgaattcggctaaatacggatggagctgctaagggagaagatattgcaggatgtggaggagttctgaggggagatagcggtgagtggatt 52643724  T
Q  118 tgtggcttttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggctctatctcatgggtttttga 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52643725 tgtggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggctctatctcatgggtttttga 52643824  T
Q  218 gggtggagcttcatgttgattctcaagtagtggttaacactatttctttcgcaaaaggtgggtcatccaccaggtggaccttagttcaaaatattagaag 317  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52643825 gggtggagcttcatgttgattctcaagtagtggttaacacaatttctttcgcaaaaggtgggtcatccaccgggtggaccttagttcaaaatattagaag 52643924  T
Q  318 acttttggagttggattgggaggttaaaatttctcattcatatcgagaagcaaactattgtgcggatgctttggcgaatttggcatgtgatggtggtttt 417  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52643925 acttttggagttggattgggaggtaaaaatttctcattcatatcgagaagcaaactattgtgcggatgctttggcgaatttggcatgtgatggtggtttt 52644024  T
Q  418 actatgattttatatgagcaatgtcctgctcaagttaattct 459  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  52644025 actacgattttatatgagcaatgtcctgctcaagttaattct 52644066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 52644085 - 52644149
Alignment:
Q  449 aagttaattctatttatctagttgatgttgttggagcttatactccgcgattagttaattgttag 513  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  52644085 aagttaattctatttatctagctgatgttgttggagcttatactccgcgattagttaattgttag 52644149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 43337261 - 43337350
Alignment:
Q  109 gagtggatttgtggcttttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggct 198  Q
    |||||||||||||  |||||||| || || | ||| ||||||||||||||||| ||||||||||  ||||||||||||||||| ||||||    
T  43337261 gagtggatttgtgatttttcaaaggggttgggagcttgtagtgcatatgttgcagagctttggggggtgtttgaaggtttgaaattggct 43337350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 49197709 - 49197763
Alignment:
Q  389 tggcgaatttggcatgtgatggtggttttactatgattttatatgagcaatgtcc 443  Q
    |||||||||||||||||||  ||| |||| || ||||||||||||||||||||||    
T  49197709 tggcgaatttggcatgtgaaagtgatttttctttgattttatatgagcaatgtcc 49197763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 457
Target Start/End: Complemental strand, 33819563 - 33819410
Alignment:
Q  304 caaaatattagaagacttttggagttggattgggaggttaaaatttctcattcatatcgagaagcaaactattgtgcggatgctttggcgaatttggcat 403  Q
    |||||||||| |||| | ||||||||||| |||||| | || |||   ||||| ||||| |||| |||| | | ||  ||||  |||||||||  |||||    
T  33819563 caaaatattataagattattggagttggagtgggagatcaagattcggcattcgtatcgtgaagaaaacaaatatgtcgatgtgttggcgaataaggcat 33819464  T
Q  404 gtgatggtggttttactatgattttatatgagcaatgtcctgctcaagttaatt 457  Q
    ||||||| |||| | || |||| ||||||||||| ||||||||| || ||||||    
T  33819463 gtgatggaggttattctttgatgttatatgagcattgtcctgctaaaattaatt 33819410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 33819838 - 33819669
Alignment:
Q  28 tggattcggctaaatacggatggagctgctaagggagaagatatt-gcaggatgtggaggagtttt-gaggggagatagcggtgagtggatttgtggctt 125  Q
    ||||||||||||||||||||||| ||| |||||  || | ||| | || || ||||| |||||||| |||||||||   ||| |||||| ||||| | ||    
T  33819838 tggattcggctaaatacggatggcgcttctaagcaagga-atagtagcgggttgtggcggagttttcgaggggagaa--cggagagtgggtttgtcgttt 33819742  T
Q  126 ttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggct 198  Q
    ||| || || || | ||| |||||||||| |||||| |||||||||   ||||| ||||||||||||||||||    
T  33819741 ttcgaaggggttgggagcttgtagtgcatgtgttgcagagctttggagggtgttagaaggtttgaagttggct 33819669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Complemental strand, 31285411 - 31284974
Alignment:
Q  18 tagtttaggatggattcggctaaatacggatggagctgctaagggagaagatattgcaggatgtggaggagttttgaggggagatagcggtgagtggatt 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31285411 tagtttaggatgaattcggctaaatacggatggagctgctaagggagaagatattgcaggatgtggaggagttctgaggggagatagcggtgagtggatt 31285312  T
Q  118 tgtggcttttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggctctatctcatgggtttttga 217  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  31285311 tttggcttttcaaaaggtttaggagcgtgtagtgcatatgttgcggagctttggggtatgtttgaaggtttgaagttggctctatctcatgggtttttga 31285212  T
Q  218 gggtggagcttcatgttgattctcaagtagtggttaacactatttctttcgcaaaaggtgggtcatccaccaggtggaccttagttcaaaatattagaag 317  Q
    |||| |  ||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  31285211 gggtcg--cttcatgttgattcttaagtagaggttaacactatttctttcacaaaaggtgggtcacccaccgggtggaccttagttcaaaatattagaag 31285114  T
Q  318 acttttggagttggattgggaggttaaaatttctcattcatatcgagaagcaaactattgtgcggatgctttggcgaatttggcatgtgatggtggtttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  31285113 acttttggagttggattgggaggttaaaatttctcattcatattgagaaacaaactattgtgcgaatgctttggcgaatttagcatgtgatggtggtttt 31285014  T
Q  418 actatgattttatatgagcaatgtcctgctcaagttaatt 457  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31285013 actatgattttatatgagcaatgtcctgctcaagttaatt 31284974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 36618485 - 36618960
Alignment:
Q  18 tagtttaggatggattcggctaaatacggatggagctgctaagggagaagatattgcaggatgtggaggagttttgaggggagatagcggtgagtggatt 117  Q
    |||||||||||||||| ||||||||| |||||||||  |||||||||||| |||||||||||||||||||||| | ||||||||||| |||||||| |||    
T  36618485 tagtttaggatggattaggctaaatatggatggagcatctaagggagaaggtattgcaggatgtggaggagttctaaggggagatagtggtgagtgtatt 36618584  T
Q  118 tgtggcttttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggctctatctcatgggtttttga 217  Q
    |||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||| | |    
T  36618585 tgtggcttttcaaaaggtttaggagcatatagtgcatatgttgcggagctttggggtgtgtttgaagatttgaagttcgctctatctcatggatttctca 36618684  T
Q  218 gggtggagcttcatgttgattctcaagtagtggttaacactatttctttcgcaaaaggtgggtcatccaccaggtggaccttagttcaaaatattagaag 317  Q
     ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||   | | ||||||||||||  ||||||||||||||||    
T  36618685 cggtggagttgcatgttgattctcaagtagtggttaacactatttcttttgcaaaaggtgggttgccgatcaggtggaccttgattcaaaatattagaag 36618784  T
Q  318 acttttggagttggattgggaggttaaaatttctcattcatatcgagaagcaaactattgtgcggatgctttggcgaatttggcatgtgatggtggtttt 417  Q
    | |||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||||||  ||||||| |||||||    
T  36618785 atttttggagttggattgagaggttaaaatttgtcattcatatagagaagcaaactcttgtgcgggtgctttggcgaatttggggtgtgatgatggtttt 36618884  T
Q  418 actatgattttatatgagcaatgtcctgctcaagttaattctatttatctagttgatgttgttggagcttatactc 493  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||| ||| || | |||||||| |||||||||    
T  36618885 actatgattttatatgagtaatgtcctgctcaagttagttccatttatttagctggttttgttggaacttatactc 36618960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 135 - 492
Target Start/End: Original strand, 47218586 - 47218943
Alignment:
Q  135 tttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggctctatctcatgggtttttgagggtggagcttcatgtt 234  Q
    ||||| ||| |||||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||    
T  47218586 tttaggagcctgtagtgcatatgttgcgaagctttggaaggtgtttgaaggtttgaagttggctctttctcatggggttttaagggtggagtttcatgtt 47218685  T
Q  235 gattctcaagtagtggttaacactatttctttcgcaaaaggtgggtcatccaccaggtggaccttagttcaaaatattagaagacttttggagttggatt 334  Q
    |||||  |||||||||||||||||||| |||| ||||||| |||||||   | | |  | ||||  ||||||||||||||||||| ||||||| ||||||    
T  47218686 gattccaaagtagtggttaacactattacttttgcaaaagatgggtcacatatcggacgaacctcggttcaaaatattagaagacctttggaggtggatt 47218785  T
Q  335 gggaggttaaaatttctcattcatatcgagaagcaaactattgtgcggatgctttggcgaatttggcatgtgatggtggttttactatgattttatatga 434  Q
    ||||||||||||||| |||||||||  | |||| | ||| |||||| |||||||| ||||||||| | ||| ||||||||||||||||||||||||||||    
T  47218786 gggaggttaaaatttgtcattcatagagtgaagtagacttttgtgcagatgctttagcgaatttgacgtgttatggtggttttactatgattttatatga 47218885  T
Q  435 gcaatgtcctgctcaagttaattctatttatctagttgatgttgttggagcttatact 492  Q
    ||||||||| |||||||||||||| |||||| ||| ||||||| ||| || |||||||    
T  47218886 gcaatgtcccgctcaagttaattccatttatttagctgatgttattgaagtttatact 47218943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 513
Target Start/End: Complemental strand, 31284975 - 31284941
Alignment:
Q  479 ttggagcttatactccgcgattagttaattgttag 513  Q
    |||||||||||| ||||||||||||||||||||||    
T  31284975 ttggagcttatattccgcgattagttaattgttag 31284941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 16856809 - 16856733
Alignment:
Q  389 tggcgaatttggcatgtgatggtggttttactatgattttatatgagcaatgtcctgctcaagttaattctatttat 465  Q
    |||||||| |||| |||||  |||||||| || ||||||| ||||||||||||||  ||||  ||| ||||||||||    
T  16856809 tggcgaatatggcttgtgaaagtggtttttctttgattttgtatgagcaatgtccatctcagattagttctatttat 16856733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 16857053 - 16856989
Alignment:
Q  145 tgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggctctatctcatgg 209  Q
    |||||||| ||||| || ||| | |||| || |||||||||||||||||||||||  ||||||||    
T  16857053 tgtagtgcttatgtggcagagttgtggggtgcgtttgaaggtttgaagttggctcgttctcatgg 16856989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 22822775 - 22822638
Alignment:
Q  72 tgcaggatgtggaggagttttgaggggagatagcggtgagtggatttgtggcttttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgg 171  Q
    |||||| |||||||| || ||||| || ||||  || || ||||||||||| ||||||||||| || |   | |||||||| ||||| || ||| | |||    
T  22822775 tgcaggttgtggaggggtgttgagaggtgataagggagaatggatttgtggtttttcaaaagggttgggctcttgtagtgcttatgtggcagagttgtgg 22822676  T
Q  172 gatgtgtttgaaggtttgaagttggctctatctcatgg 209  Q
    | |||||||||||| |||||||||||||  ||||||||    
T  22822675 ggtgtgtttgaaggcttgaagttggctcgttctcatgg 22822638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 22822458 - 22822382
Alignment:
Q  389 tggcgaatttggcatgtgatggtggttttactatgattttatatgagcaatgtcctgctcaagttaattctatttat 465  Q
    |||||||| |||| |||||  |||||||| || |||||||||||||||||||||| |||||  ||| ||||||||||    
T  22822458 tggcgaatatggcttgtgaaagtggtttttctttgattttatatgagcaatgtccagctcagattagttctatttat 22822382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 10018647 - 10018735
Alignment:
Q  109 gagtggatttgtggcttttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggct 198  Q
    |||||||| ||||| ||||| || || || | ||| |||||| |||||||||| ||||||||||  ||||| ||| ||||||||||||||    
T  10018647 gagtggatatgtggtttttcgaaggggttgggagcttgtagtacatatgttgccgagctttgggg-gtgttcgaaagtttgaagttggct 10018735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 481
Target Start/End: Original strand, 8267407 - 8267501
Alignment:
Q  387 tttggcgaatttggcatgtgatggtggttttactatgattttatatgagcaatgtcctgctcaagttaattctatttatctagttgatgttgttg 481  Q
    |||||||| |||| ||||||||  |||||||||||| ||||||  |||| |||||| || |||||||| || ||||||| ||| ||||| |||||    
T  8267407 tttggcgattttgccatgtgataatggttttactataattttaattgagtaatgtcttgttcaagttagttttatttatttagctgatgctgttg 8267501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 4085869 - 4085780
Alignment:
Q  110 agtggatttgtggcttttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggctc 199  Q
    ||||||||||||| ||||||||| | |||| || ||||||||| ||||| || ||||| |||| ||| || ||||| |||||| ||||||    
T  4085869 agtggatttgtggattttcaaaatggttaggagtgtgtagtgcgtatgtggctgagctatggggtgttttggaaggcttgaagatggctc 4085780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 587829 - 587906
Alignment:
Q  163 gagctttgggatgtgtttgaaggtttgaagttggctctatctcatgggtttttgagggtggagcttcatgttgattct 240  Q
    |||||||||| |||||||||||||||||||||| ||  | ||  ||| |||   || |||||||||||||||||||||    
T  587829 gagctttggggtgtgtttgaaggtttgaagttgactagagctagtggatttaatagagtggagcttcatgttgattct 587906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 23461174 - 23461077
Alignment:
Q  112 tggatttgtggcttttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggctctatctcatgg 209  Q
    ||||||||||| ||||||||||| || |   | |||||||| ||||| || ||| | |||| |||||||||||| |||||||||||||  ||||||||    
T  23461174 tggatttgtggtttttcaaaagggttgggctcttgtagtgcttatgtggcagagttgtggggtgtgtttgaaggcttgaagttggctcgttctcatgg 23461077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 3575470 - 3575381
Alignment:
Q  110 agtggatttgtggcttttcaaaaggtttagaagcgtgtagtgcatatgttgcggagctttgggatgtgtttgaaggtttgaagttggctc 199  Q
    ||||||||||||||||||||||| | |||  || ||||||||| ||||| || ||  | |||| |||||| ||||| |||||| ||||||    
T  3575470 agtggatttgtggcttttcaaaatggttaagagtgtgtagtgcgtatgtggctgaagtatggggtgtgttagaaggcttgaagatggctc 3575381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 23460897 - 23460821
Alignment:
Q  389 tggcgaatttggcatgtgatggtggttttactatgattttatatgagcaatgtcctgctcaagttaattctatttat 465  Q
    |||||||| |||| |||||  |||| ||| || ||||||||||||| |||||||| |||||  ||| ||||||||||    
T  23460897 tggcgaatatggcttgtgaaagtgggttttctttgattttatatgaacaatgtccagctcatattagttctatttat 23460821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 19678873 - 19678797
Alignment:
Q  389 tggcgaatttggcatgtgatggtggttttactatgattttatatgagcaatgtcctgctcaagttaattctatttat 465  Q
    |||||||| |||| |||||  |||||||| || ||||||| |||||||||||||| |||||  ||| ||||||||||    
T  19678873 tggcgaatatggcttgtgaaagtggtttttctttgattttgtatgagcaatgtcccgctcagattagttctatttat 19678797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 38971791 - 38971736
Alignment:
Q  410 gtggttttactatgattttatatgagcaatgtcctgctcaagttaattctatttat 465  Q
    |||||||| || |||||||||||||||||||||| |||||  ||| ||||||||||    
T  38971791 gtggtttttctttgattttatatgagcaatgtccagctcagattagttctatttat 38971736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 47571 - 47640
Alignment:
Q  388 ttggcgaatttggcatgtgatggtggttttactatgattttatatgagcaatgtcctgctcaagttaatt 457  Q
    ||||||||| || |||||||||| |||||| || |||| ||||||||||| ||| ||  |||||||||||    
T  47571 ttggcgaatatgacatgtgatggaggtttttctttgatattatatgagcattgtactcttcaagttaatt 47640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University