View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_5 (Length: 540)
Name: NF6340_low_5
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 14 - 524
Target Start/End: Original strand, 1720608 - 1721118
Alignment:
| Q |
14 |
acctgtgaggacgcgtatggattctattgggaatgcaaaattattagtcagtagttttttcatgttaacaacatcattaacggttcccttgagcatgtac |
113 |
Q |
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| T |
1720608 |
acctgtgaggacgcgtatggattctattgggaatgcaaaattattagtcagtagttttttcatgttaacaacatcattaacggttcccttgagcatgtac |
1720707 |
T |
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| Q |
114 |
cgtcttcttctgtaagtaactccacatagaaccgcgcgtttgttaccgattgtagttgtagacaacaacaaagaggaatggcttgatgcatttttactag |
213 |
Q |
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| T |
1720708 |
cgtcttcttctgtaagtaactccacatagaaccgcgcgtttgttaccgattgtagttgtagacaacaacaaagaggaatggcttgatgcatttttactag |
1720807 |
T |
|
| Q |
214 |
cattttgttgtcgatcttggttgaagaatttggctcttaaactattttctctgaattgtttataacctgaaattgatttactaacaccttcgcatttgtt |
313 |
Q |
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| T |
1720808 |
cattttgttgtcgatcttggttgaagaatttggctcttaaactattttctctgaattgtttataacctgaaattgatttactaacaccttcgcatttgtt |
1720907 |
T |
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| Q |
314 |
gcaacggtacatagttgtttctgtgaacactaaaaactctcgtttgcaatcactgcaagcaagnnnnnnnccaccagtatgcattgaagttgagctaagt |
413 |
Q |
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| T |
1720908 |
gcaacggtacatagttgtttttgtagacactaaaaactctcgtttgcaatcactgcaagcaagtttttttccaccagtatgcattgaagttgagctaagt |
1721007 |
T |
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| Q |
414 |
aacttatgataatttaagcaagtaccgttagtgttatttctggtaacactgtttttgtttcttttggcttttaatttatcactcattatttgatcaggcc |
513 |
Q |
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| T |
1721008 |
aacttatgataatttaagcaagtaccgttagtgttatttctggtaacactgtttttgtttcttttggcttttaatttatcactcattatttgatcagggc |
1721107 |
T |
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| Q |
514 |
aagtatatatg |
524 |
Q |
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| T |
1721108 |
aagtatatatg |
1721118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 260
Target Start/End: Complemental strand, 18372915 - 18372697
Alignment:
| Q |
42 |
gggaatgcaaaattattagtcagtagttttttcatgttaacaacatcattaacggttcccttgagcatgtaccgtcttcttctgtaagtaactccacata |
141 |
Q |
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| T |
18372915 |
gggaatgcaaaattgttaaccgttagattttccatgttaacgacatcattaatggttcc-ttgagcttgtaacatcttcg-ctgcaagttactccacata |
18372818 |
T |
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| Q |
142 |
gaaccgcgcgtttgttaccgattgtagttgtagacaacaacaaagaggaatggcttgatgcatttttac--tagcattttgttgtcgatcttggttgaag |
239 |
Q |
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| T |
18372817 |
gaaccatgtgcttgttacgggtgattgttgtagacaacaacgacgaggaatggcctgatgcatttgtgctatagcactgtgtagttgatcttggttgaac |
18372718 |
T |
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| Q |
240 |
aatttggctcttaaactattt |
260 |
Q |
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|||| ||| |||||||||| |
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| T |
18372717 |
aattcagcttctaaactattt |
18372697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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