View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_6 (Length: 509)
Name: NF6340_low_6
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_6 |
 | |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 50805198 - 50804717
Alignment:
| Q |
18 |
gatatgaggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50805198 |
gatatgaggctaacaaagatgtttttgagagtctgagaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttc |
50805099 |
T |
|
| Q |
118 |
atataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50805098 |
atataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacat |
50804999 |
T |
|
| Q |
218 |
tattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50804998 |
tattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgt |
50804899 |
T |
|
| Q |
318 |
cgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctgctcacaatggtag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
50804898 |
tgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtagtctctgctcacaatggtag |
50804799 |
T |
|
| Q |
418 |
aaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50804798 |
aaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatgatgt |
50804717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 50870679 - 50871160
Alignment:
| Q |
18 |
gatatgaggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50870679 |
gatatgaggctaacaaagatgtttttgagagtctgagaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttc |
50870778 |
T |
|
| Q |
118 |
atataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50870779 |
atataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacat |
50870878 |
T |
|
| Q |
218 |
tattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50870879 |
tattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgt |
50870978 |
T |
|
| Q |
318 |
cgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctgctcacaatggtag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
50870979 |
tgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtagtctctgctcacaatggtag |
50871078 |
T |
|
| Q |
418 |
aaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50871079 |
aaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatgatgt |
50871160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 19056989 - 19057467
Alignment:
| Q |
18 |
gatatgaggctaacaaagatgtttttgagagtctgagnnnnnnn-ccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19056989 |
gatatgaggctaacaaagatgtttttgagagtctgagaaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtatcctttacgggtt |
19057088 |
T |
|
| Q |
117 |
catataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctaca |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19057089 |
catatatcttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctaca |
19057188 |
T |
|
| Q |
217 |
ttattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19057189 |
ttattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtg |
19057288 |
T |
|
| Q |
317 |
tcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctgctcacaatggta |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
19057289 |
tcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtattctctgctcacaatggta |
19057388 |
T |
|
| Q |
417 |
gaaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcctgatg |
495 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19057389 |
gaaacaaatccccggagttaggtaggaccacaatgccaagactaatgtatgttatgtgtgattgtaggatgtcctgatg |
19057467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 40705616 - 40705780
Alignment:
| Q |
25 |
ggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttcatataac |
124 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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|
| T |
40705616 |
ggctaacaaagatgtttttgagagtctaaggaaaaatccaaaagtagaatacgacgggcaacggttctcttacaaggtaacttttacgggttcatatatc |
40705715 |
T |
|
| Q |
125 |
ttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
193 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
40705716 |
tt-aacagttttatatttaaatactcctttagcaaataacttattcat---ttgtttgttttttgtcta |
40705780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 11343 - 11181
Alignment:
| Q |
25 |
ggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttcatataac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||| || ||| || |||||||||||||||||||||||||||||||| | |
|
|
| T |
11343 |
ggctaacaaagatgtttttgagagtctgaggaaaaacccaaaagtagagtacgacaggaaacagtactcttacaaggtaacctttacgggttcatatatc |
11244 |
T |
|
| Q |
125 |
ttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgtttttt |
188 |
Q |
| |
|
|||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11243 |
ttaa-caattttatatttaaatactcctttagcaaataacttcttcatctgttgtttttttttt |
11181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 338
Target Start/End: Original strand, 42348931 - 42349049
Alignment:
| Q |
229 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcagggg---------aatgaaattgagatttgtgtcg |
319 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
42348931 |
caagatggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgtcg |
42349030 |
T |
|
| Q |
320 |
aaagtggtatgtactcttc |
338 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
42349031 |
aaagtggtatgcactcttc |
42349049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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