View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6340_low_8 (Length: 474)
Name: NF6340_low_8
Description: NF6340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6340_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 47558611 - 47558228
Alignment:
| Q |
15 |
cattttgcttgaatgctaacctatggacgaaggttctagtccctaaaaaatcttttttgtgaataaaaatataaaaacgaatacagcaagaggagacaca |
114 |
Q |
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| T |
47558611 |
cattttgcttgaatgctaacct--gggcgtaggttctagtccctacaaaatcttttttgtgaataaaaatataaaaacgaatacagcaagaagagacaca |
47558514 |
T |
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| Q |
115 |
aggacttgaactgaacttatatttcaaaattgttcagttttcgttgcgacatatacaaatcttataa-attgtacggttaatatagtatatataaactat |
213 |
Q |
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| T |
47558513 |
aggacttgaactgaacttatattccaaaattgttcagttttcgttgcgacgtatacaaatcttataacattgtacgcttaaaaaagtatatataaactat |
47558414 |
T |
|
| Q |
214 |
atgaggggtgtcatggcacccatgggctcctttgaagatcttccactagttccgagccttaaaacacaagaaacacatgaaagcaatgagatagaatgat |
313 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47558413 |
atgagaggtgtcatggcacccatgggctcctttgaagatcttcctctagttccgagccttaaaacacaagaaacacatgaaagcaatgagatagaatgat |
47558314 |
T |
|
| Q |
314 |
tagcatgattcttaaattggttatccctgtaacaaacaagttcgatctttgggtcagcacaattcaaattatataatccgaactta |
399 |
Q |
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| T |
47558313 |
tagcatgattcttaaattggttatccctgtaacgaacaagttcgatctttgggtcagcacaattcagattatataatccgaactta |
47558228 |
T |
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