View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_high_11 (Length: 311)
Name: NF6341_high_11
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 47624966 - 47625276
Alignment:
| Q |
1 |
gtcatggtcatgacatagtttgttttgttttccacattgcaataccccaaaaaacgatatttagatcattgtctaccacagcaaaacttgcaggcagcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624966 |
gtcatggtcatgacatagtttgttttgttttccacattgcaataccccaaaaaacgatatttagatcattgtctaccacagcaaaacttgcaggcagcag |
47625065 |
T |
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| Q |
101 |
agttaacttgaataatttgcacagacatataaacactaaacaacaataatctagcagcttaaacagctatagtaaaatcatgtcatgccactgagagtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47625066 |
agttaacttgaataatttgcacagacatataaacactaaacaacaataatctagcagcttaaacagctatagtaaaatcatgtcatgccactgacagtac |
47625165 |
T |
|
| Q |
201 |
agagtcatctcttaatattgaaggtaattggtaccttggagagctccagtgaaggaggaataactatagagctgatcttcaacaggcacctctctgaaga |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625166 |
agagtcatctcttaatattgaaggtaattgttaccttggagagctccagtgaaggaggaataactatagagctgatcttcaacaggcacctctctgaaga |
47625265 |
T |
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| Q |
301 |
atctttctccc |
311 |
Q |
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||||||||||| |
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| T |
47625266 |
atctttctccc |
47625276 |
T |
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