View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_high_12 (Length: 308)
Name: NF6341_high_12
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_high_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 55 - 308
Target Start/End: Complemental strand, 5175087 - 5174836
Alignment:
| Q |
55 |
tataattgagtttcatttggacaaaccaaattggaa---atcttaatctgtctaaggtcattttttgcttagcttggactattgaaatttactaactgct |
151 |
Q |
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| T |
5175087 |
tataattgagtttcatttggacaaacccaattggaattaatcttaatctgtctaaggtcattttttgctt-----ggactattgaaatttactaactgct |
5174993 |
T |
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| Q |
152 |
agtgactacatctattatctttttgtttttaactcattattgccatttttattgtcaataataatgattactactgtgttgcctaaggtaatgtttagag |
251 |
Q |
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| T |
5174992 |
agtgactacatctattatctttttgtttttaactcattattgccatttttattgtcaataataatgattactactgtgttgcctaaggtaatgtttagag |
5174893 |
T |
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| Q |
252 |
taagacaaggggagggatttaagtatatatttttaactcctatgcctatgcttctcc |
308 |
Q |
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| T |
5174892 |
taagacaaggggagggatttaagtatatatttttaactcctatggctatgtttctcc |
5174836 |
T |
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