View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_high_13 (Length: 293)
Name: NF6341_high_13
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 29736257 - 29736516
Alignment:
| Q |
18 |
aagggaaaagtaaactacaaaatttaa----tgccttgaaaaataagcaaccaccatcgactttgcattataaatcagcatgtgatgtacattgtgaaat |
113 |
Q |
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| T |
29736257 |
aagggaaaagtaaacaacaaaaattaaccaatgccttgaaaaataagcaaccaccatcgactttgcattataaatcagcatgtgatgtacattgtgaaat |
29736356 |
T |
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| Q |
114 |
gcagtagcaagataaatggcttctaagaagtgctcccttatttgggtgattctctttttgtgtatgctcagtttatctgtcaaggctatagcaagaaaca |
213 |
Q |
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| T |
29736357 |
gcagtagcaagataaatggcttctaagaagtgctcccttatttgggtgattctctttttgtgtatgctcggtttatctgtcaaggctatagcaagaaaca |
29736456 |
T |
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| Q |
214 |
ttgttggtgctactgaaatgtatgctggtataagttatagaacctcaatcacacctctcatt |
275 |
Q |
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| T |
29736457 |
ttgttggtgctactgaaatgtatgctgg--taagttatagaacctcaatcacacctctcatt |
29736516 |
T |
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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 9719394 - 9719228
Alignment:
| Q |
23 |
aaaagtaaactacaaaatttaatgccttgaaaaataagcaaccaccatcgactttgcattataaatcagcatgtgatg--tacattgtgaaatgcagtag |
120 |
Q |
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| T |
9719394 |
aaaagtaaactgcgtaaattaatgccttgaaaaataagcaactaccatcgaatttgcattataaatatgcatgtgttgagtaggttatgaaatgcagtag |
9719295 |
T |
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| Q |
121 |
caagataaatggcttctaagaagtgctcccttatttgggtgattctctttttgtgtatgctcagttt |
187 |
Q |
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| T |
9719294 |
caagaaaaatggtttcaaataagttctcctttatttgggtggttctctttttgtgtatgctgagttt |
9719228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 13585661 - 13585495
Alignment:
| Q |
23 |
aaaagtaaactacaaaatttaatgccttgaaaaataagcaaccaccatcgactttgcattataaatcagcatgtgatg--tacattgtgaaatgcagtag |
120 |
Q |
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||||||||||| | || |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| || || || ||||||||||||| |
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| T |
13585661 |
aaaagtaaactgcgtaaattaatgccttgaaaaataagcaactaccatcgaatttgcattataaatatgcatgtgttgagtaggttatgaaatgcagtag |
13585562 |
T |
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| Q |
121 |
caagataaatggcttctaagaagtgctcccttatttgggtgattctctttttgtgtatgctcagttt |
187 |
Q |
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| T |
13585561 |
caagaaaaatggtttcaaataagttctcctttatttgggtggttctctttttgtgtatgctgagttt |
13585495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 13848497 - 13848550
Alignment:
| Q |
117 |
gtagcaagataaatggcttctaagaagtgctcccttatttgggtgattctcttt |
170 |
Q |
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| T |
13848497 |
gtagcaagaaaaatggcttcaaagaagtgctctcttattttggtagttctcttt |
13848550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 13864378 - 13864431
Alignment:
| Q |
117 |
gtagcaagataaatggcttctaagaagtgctcccttatttgggtgattctcttt |
170 |
Q |
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| T |
13864378 |
gtagcaagaaaaatggcttcaaagaagtgctctcttattttggtagttctcttt |
13864431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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