View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_high_24 (Length: 241)
Name: NF6341_high_24
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 8790854 - 8790648
Alignment:
| Q |
20 |
cacacatatggtggcttaaatctagtgaattgaaatcaagcaagacaaagaaaattcttctcgttcacctttattgatgcatctcttggctcctttggaa |
119 |
Q |
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| T |
8790854 |
cacacatatggtggcttaaatctagtgaattgaaatcaagcaagacaaagaaaattcttctcgttcacctttattgatgcatctcttggctcctttggaa |
8790755 |
T |
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| Q |
120 |
atctc-ttgacagagtttgaatcaattgaacgaaatatttgcattatatagaattcacaatcaatagtttctattatgtggggtatgacatttattaacc |
218 |
Q |
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| T |
8790754 |
atctctttgacagagtttgaatcaattgaacgaaatatttgcattatatagaattcacaaccaatagtttctattatgtggggtatggcatttattaacc |
8790655 |
T |
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| Q |
219 |
atgtttt |
225 |
Q |
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||||||| |
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| T |
8790654 |
atgtttt |
8790648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 12693384 - 12693532
Alignment:
| Q |
18 |
gtcacacatatggtggcttaaatctagtgaattgaaatcaagc--aagacaaagaaaattcttctcgttcacctttattgatgcatctcttggctccttt |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| || | |||||||| |||| ||||||||||||||||| ||||||||||||||||| |
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| T |
12693384 |
gtcacacatatggtggcttaaatctggtgaattgaaatcaagcgaaaaaaaaagaaaactctttccgttcacctttattgatccatctcttggctccttt |
12693483 |
T |
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| Q |
116 |
ggaaatctcttgacagagtttgaatcaattgaacgaaatatttgcatta |
164 |
Q |
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| T |
12693484 |
ggaaatcccttgacagagtttgaatcaattgaacgaaatatctgcatta |
12693532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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