View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_high_3 (Length: 419)
Name: NF6341_high_3
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 24527725 - 24527336
Alignment:
| Q |
11 |
cacagacacgtcgcacacaaagatggttctcatttttataatagtttctcttatgttgaattgttttttctctcatatcgagttgcttgcacatacacat |
110 |
Q |
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| T |
24527725 |
cacagacacatcgcatgcaaagatgattctcatttttataatagtttctcttatgttggattgttttttctctcatatcgagttgcttgcacatacacat |
24527626 |
T |
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| Q |
111 |
actcatcccgagtgtaatttatacaatcacttgtgtttgattaacacgtctaatgacgaaattatatcatccatttaacacatttgttgtcaattgtttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24527625 |
actcatcccgagtgtaatttatacaatcacttgtttttgattaacacgtctgatgacgaaattatatcatccatttaacacatttgtagtcaattgtttt |
24527526 |
T |
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| Q |
211 |
ttctcttgcattgggttgcgcacacactcatattaagtgtactttatacattctcgannnnnnnnngtctaaataacacatttgttgacgaaattatacc |
310 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
24527525 |
ttctctcgcattgggttgcgcacacactaatattaagtgtactttatacattcttgatttttttttgtctaaataacacatttgttgacgaaattatacc |
24527426 |
T |
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| Q |
311 |
atccatttagatttgtcatcttcatttgtatcggnnnnnnnnnaaaatcaaaattgattttttatttaataaaccaaaaagatatattaat |
401 |
Q |
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||||||||| | |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24527425 |
atccatttaactctgtcatcttcatttttatcggtatattttg-aaatcaaaattgattttttatttaataaaccaaaaagatatattaat |
24527336 |
T |
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