View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_high_6 (Length: 337)
Name: NF6341_high_6
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 30724501 - 30724829
Alignment:
| Q |
1 |
ttagtttgttaatagaccatatggttcaatgcaaacaagtatccttaatctatgtcattcaggttttgacaaaacaaaatgtggctgttctacctaaatt |
100 |
Q |
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| T |
30724501 |
ttagtttgttaatagaccatatggttcaatgcaaacaagtatccttaatctatgtcattcaggttttgacaaaacaaaatgtggctgttctacctaaatt |
30724600 |
T |
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| Q |
101 |
tgcaatgttgagccatttggatcttggctatattactggtgaagtttggtttggcttacttcacaaaactcctgttctcaatactctagttttcaaggtt |
200 |
Q |
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| T |
30724601 |
tgcaatgttgagccatttggatcttggctatattactggtgaagtttggtttggtttacttcacaagactcctgttctcaatactctagttttcaaggtt |
30724700 |
T |
|
| Q |
201 |
agtaataatgagcatatttgttactattctttaaccttcatatctcctcttatttagactttgtttgattatatctattttttagagaatattcgaattc |
300 |
Q |
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| T |
30724701 |
agtaataatgagcatatttgttactattctttaaccttcatatctcctcttatttagactttgtttgattatatctattttttagagaatattcgaattc |
30724800 |
T |
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| Q |
301 |
aaccaagagcttctgaattctgatgatgt |
329 |
Q |
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| T |
30724801 |
aaccaagagcttctgaattctgctgatgt |
30724829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 30716854 - 30717018
Alignment:
| Q |
42 |
tccttaatctatgtcattcaggttttgacaaaacaaaatgtggctgttctacctaaatttgcaatgttgagccatttggatcttggctatattactggtg |
141 |
Q |
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| T |
30716854 |
tccttaatgtttgtcatccaggttctcacacaaccaaatatggttcttctacctaaatttgcaatgctgacccatttggatcttggctctgttagtgatg |
30716953 |
T |
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| Q |
142 |
aagtttggtttggcttacttcacaaaactcctgttctcaatactctagttttcaaggttagtaat |
206 |
Q |
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| T |
30716954 |
aagttttgttgtgcttacttcaaaagtctcctgttctcaatactctagttttcaaggttggtaat |
30717018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 58 - 322
Target Start/End: Original strand, 30710443 - 30710701
Alignment:
| Q |
58 |
ttcaggttttgacaaaacaaaatgtggctgttctacctaaatttgcaatgttgagccatttggatcttggctatattactggtgaagtttggtttggctt |
157 |
Q |
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|||||||| | |||||| |||| || ||||| |||| ||||||||||||||||||||||||||| ||||| | ||| ||||||||||| ||| ||||| |
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| T |
30710443 |
ttcaggttctcacaaaatcaaatatgactgttttaccaaaatttgcaatgttgagccatttggatgttggcattgttagtggtgaagttttgttgggctt |
30710542 |
T |
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| Q |
158 |
acttcacaaaactcctgttctcaatactctagttttcaaggttagtaataatgagcatatttgttactattctttaaccttcatatctcctcttatttag |
257 |
Q |
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| T |
30710543 |
gcttcagaagactcctgttctcactattctagatttcaaggtttg---taattaacat-tttatta-tactc-ttaacaattatatctcctcttatttaa |
30710636 |
T |
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| Q |
258 |
actttgtttgattatatctattttttagagaatattcgaattcaaccaagagcttctgaattctg |
322 |
Q |
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|||| ||| |||||||||| || |||| |||||| ||||||||| |||||||||||||||||| |
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| T |
30710637 |
acttcttttcattatatctacttattagggaatatccgaattcaatgaagagcttctgaattctg |
30710701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 11358978 - 11358822
Alignment:
| Q |
44 |
cttaatctatgtcattcaggttttgacaaaacaaaatgtggctgttctacctaaatttgcaatgttgagccatttggatcttggctatattactggtgaa |
143 |
Q |
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|||||| | |||||| |||| | | ||| ||||||| |||| ||| |||||| |||||||||||| ||||||||||||||||||| | ||| ||||||| |
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| T |
11358978 |
cttaatgtttgtcatccaggctctcacacaacaaaaaatggcagttttacctacatttgcaatgttaagccatttggatcttggctttgttagtggtgaa |
11358879 |
T |
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| Q |
144 |
gtttggtttggcttacttcacaaaactcctgttctcaatactctagttttcaaggtt |
200 |
Q |
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|||| | | |||| ||||| || ||||| |||||||||||||||||||| ||||| |
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| T |
11358878 |
gttttgatgagctttcttcaaaagactccatttctcaatactctagttttccaggtt |
11358822 |
T |
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