View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6341_low_1 (Length: 662)
Name: NF6341_low_1
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 598
Target Start/End: Original strand, 2781943 - 2782520
Alignment:
| Q |
17 |
aattatcactactacaattagttataaaaact-atatcctatttaactcatgatcaggaaatgacggtcatcaatgtcatcaaacaaaccaagatatagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2781943 |
aattatcactactacaattagttataaaaacttatatcctatttaactcatgatcaggaaatgacggtcatcaa---------acaaaccaagacatagt |
2782033 |
T |
|
| Q |
116 |
aaccaacttgtttgactccaagtcataaacaacta----gttttcttccctcacttggtcaactttatccacgtaggagtgagaaaacaaatccattgat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2782034 |
aaccaacttgtttgactccaagtcataaacaactacgtagttttcttccctcacttggtcaactttatccacgtaggagtgagaaaacaaatccattgat |
2782133 |
T |
|
| Q |
212 |
tnnnnnnnnnnnncaggtggcttcaatagtagcaagttgccccactatatttcatttctttttactttggcctcaaaatttggctatataaataattgcg |
311 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
2782134 |
taaaaaagaaaaacaggtggtttcaatagtagcaagttgccccactatatttcatttctttttattttggcctcaaaatttggttatataaataattgcg |
2782233 |
T |
|
| Q |
312 |
agcctttgtgtaagacaatataaaacataacattttcaaggttgatgagatgaagaagaaatgtgagttgtgcaaaagtccagcaaagttgttctgtgaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2782234 |
agcctttgtgtaagacaatataaaacataacattttcaaggttgatgagatgaagaagaaatgtgagttgtgcaaaagtccagcaaagttgttctgtgaa |
2782333 |
T |
|
| Q |
412 |
tcagatcaggcaagcctttgttgggaatgtgatgctaaggttcacactgcaaacttcatagtcacaaagcatcacaggtttcttctctgccatatttgtc |
511 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2782334 |
tcagatcaagcaagcctttgttgggaatgtgatgctaaggttcacactgcaaacttcatagtcacaaagcatcacaggtttcttctctgccatatttgtc |
2782433 |
T |
|
| Q |
512 |
aatctttaacaccttggcatggcactggacccaagtttgtacccactatctccctttgtaaccactgtgttgctgttaccaacaaca |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2782434 |
aatctttaacaccttggcatggcactggacccaagtttgtacccactatctccctttgtaaccactgtgttgctgttaccaacaaca |
2782520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University