View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6341_low_11 (Length: 320)

Name: NF6341_low_11
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6341_low_11
NF6341_low_11
[»] chr3 (23 HSPs)
chr3 (18-301)||(22457927-22458210)
chr3 (18-301)||(22480908-22481191)
chr3 (19-303)||(22436070-22436354)
chr3 (19-304)||(22467390-22467675)
chr3 (20-303)||(22634946-22635229)
chr3 (19-304)||(22629882-22630165)
chr3 (50-303)||(22357472-22357725)
chr3 (21-304)||(22430611-22430894)
chr3 (50-304)||(22442212-22442466)
chr3 (19-304)||(22367363-22367648)
chr3 (19-303)||(22353251-22353535)
chr3 (15-295)||(22620319-22620599)
chr3 (16-298)||(22656490-22656772)
chr3 (19-187)||(37930298-37930467)
chr3 (26-301)||(30988739-30989014)
chr3 (10-184)||(22647602-22647776)
chr3 (74-237)||(21946445-21946608)
chr3 (10-184)||(21931295-21931469)
chr3 (10-228)||(22180247-22180465)
chr3 (10-301)||(21937910-21938201)
chr3 (267-301)||(22180174-22180208)
chr3 (29-163)||(22614708-22614842)
chr3 (153-239)||(22628096-22628182)
[»] chr1 (4 HSPs)
chr1 (26-229)||(34990046-34990249)
chr1 (75-237)||(2304969-2305131)
chr1 (26-184)||(34976245-34976403)
chr1 (26-184)||(34983356-34983514)
[»] chr7 (2 HSPs)
chr7 (15-92)||(872147-872224)
chr7 (15-92)||(1233424-1233501)
[»] chr5 (1 HSPs)
chr5 (26-226)||(40580766-40580966)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 22457927 - 22458210
Alignment:
Q  18 ctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  22457927 ctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatgcaccagatcatgaacacaacaactttttgctcttccatcaatactaa 22458026  T
Q  118 ttgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  22458027 ttgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttaccatatcatctttcacaaatccttc 22458126  T
Q  218 agccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgag 301  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458127 agccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgag 22458210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 22480908 - 22481191
Alignment:
Q  18 ctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  22480908 ctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatgcaccagatcatgaacacaacaactttttgctcttccatcaatactaa 22481007  T
Q  118 ttgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  22481008 ttgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttaccatatcatctttcacaaatccttc 22481107  T
Q  218 agccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgag 301  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481108 agccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgag 22481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 22436070 - 22436354
Alignment:
Q  19 taatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaat 118  Q
    |||||||||||||||||||||| || ||| |||| |||||||||| |||||| |||| ||||||||||| |||||||||| |||||||||||||||| ||    
T  22436070 taatattcttgcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactaaatcatgaacacgacaactttttactcttccatcaatacttat 22436169  T
Q  119 tgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttca 218  Q
    ||||||||| |||||||||| |||| ||| ||| ||| |||||||||| | ||||| ||||||||||||  || | || || ||||||||||| ||||||    
T  22436170 tgaaactacatgcaccaaacttctattgaccaactctattaaatatccttttgcaatatcttccaatgtccttcccctctcttctttcacgaacccttca 22436269  T
Q  219 gccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgaggt 303  Q
    || |||||||| ||| ||||| | |||| | |||||||| |  ||||||||||||||||||||||||| ||||| ||||||||||    
T  22436270 gcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatacaagaaacacgacttgaggt 22436354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 22467390 - 22467675
Alignment:
Q  19 taatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaat 118  Q
    |||||||||||||||||||||| || ||| |||| |||||||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||| ||    
T  22467390 taatattcttgcaaaaacttaaatcctcatatttatcaaggatcattgcatgcactagatcatgaacacgacaactttttactcttccatcaatacttat 22467489  T
Q  119 tgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttca 218  Q
    |||||||||||||||||||| ||||  |||||| ||| |||||||||| || ||||| |||||||||||  |  | || || || ||||| || ||||||    
T  22467490 tgaaactacttgcaccaaacttctatggatcaactctattaaatatccttcagcaacctcttccaatgtcctccccctgtcttccttcacaaacccttca 22467589  T
Q  219 gccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgaggtt 304  Q
    || |||||||| ||| ||||  | |||| | |||||||| |  ||||||||||||||||||||||||| |||||||||||||||||    
T  22467590 gcaatccattggcgagtcaacgtctttgaatgaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggtt 22467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 22634946 - 22635229
Alignment:
Q  20 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 119  Q
    ||||||||||||||||||||| || | | |||| |||||||||| | |||| |||||||||||||| |  ||||||||| ||||||||||||||||| ||    
T  22634946 aatattcttgcaaaaacttaaatccttaaatttgtcaaggatcatttcatgcactagatcatgaacgcggcaactttttactcttccatcaatactagtt 22635045  T
Q  120 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 219  Q
    ||||||||||||||||||| ||||  |||||| |||  ||||||||| |||||||| ||||| |||||  || | || || ||||||||||| |||||||    
T  22635046 gaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgcaacctcttcaaatgtccttcccctgtcttctttcacgaacccttcag 22635145  T
Q  220 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgaggt 303  Q
    | |||||||| ||| ||||| | |||| | |||||||| |  ||||||||||||||||||||||||| ||||||||||||||||    
T  22635146 caatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggt 22635229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 22629882 - 22630165
Alignment:
Q  19 taatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaat 118  Q
    |||||||||||||||||||||| || ||| |||| |||||||||| |||||| ||||||||||| |||| |||||||||| |||||||||  |||||  |    
T  22629882 taatattcttgcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactagatcatgtacacgacaactttttactcttccat--atacttgt 22629979  T
Q  119 tgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttca 218  Q
    |||||||||||||||||||| ||||| || ||| ||| |||||||||| ||| |||| |||||||||||| || |  |  | |||||||| || ||||||    
T  22629980 tgaaactacttgcaccaaacttctacggaccaactctattaaatatccttctccaacctcttccaatgttcttcccttgacttctttcacaaacccttca 22630079  T
Q  219 gccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgaggtt 304  Q
    || |||||||| ||| |||| |  |||| | |||||||| |  |||||||||| |||||||||||||| |||||||||||||||||    
T  22630080 gcgatccattggcgagtcaacacctttgaacgaactatatagtcttcaggatagaatccaaaatacaagaaacatgacttgaggtt 22630165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 50 - 303
Target Start/End: Original strand, 22357472 - 22357725
Alignment:
Q  50 tttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatc 149  Q
    |||||||||||||| | |||| |||||||||||||||| ||||| |||| |||||||||||||||| |||||| ||||||||||||||| ||||   ||     
T  22357472 tttttcaaggatcatttcatgcactagatcatgaacacgacaacgttttactcttccatcaatactgattgaatctacttgcaccaaacttctatgtatt 22357571  T
Q  150 aaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtag 249  Q
    || ||| |||||||||| |||||||| |||||||  ||| || | | ||  | |||||| || |||||||| |||||||| ||| ||||| | |||| |     
T  22357572 aactcttttaaatatccttctgcaacctcttccatcgttctttccccatattgtttcacaaacccttcagcaatccattgtcgagtcaatgtctttgaat 22357671  T
Q  250 gaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgaggt 303  Q
    ||||| || |  ||||||||||||||||||||||||| ||||||||||||||||    
T  22357672 gaactttatagtcttcaggatataatccaaaatacaagaaacatgacttgaggt 22357725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 22430611 - 22430894
Alignment:
Q  21 atattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattg 120  Q
    |||| ||| ||||| ||||| || ||| |||||| |||||||| | |||| |||||||||||||||| ||||||| || |||||||||||||||| ||||    
T  22430611 atatacttacaaaagcttaaatcctcatattttttaaggatcatttcatgcactagatcatgaacacgacaacttcttactcttccatcaatacttattg 22430710  T
Q  121 aaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagc 220  Q
    || ||||||||||||||| ||||  |||||| ||| |||||||||| |||||||| |||| ||||||  || |  | |  |||||||| || ||||||||    
T  22430711 aatctacttgcaccaaacttctatggatcaactctattaaatatccttctgcaacctctttcaatgtccttcccgttttttctttcacaaacccttcagc 22430810  T
Q  221 catccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgaggtt 304  Q
     |||||||| | | | ||| | |||| |  ||||||| |  ||| ||||||||||||||||||||| |||||||||||||||||    
T  22430811 aatccattgacaagttaatgtctttgaataaactatatagtctttaggatataatccaaaatacaagaaacatgacttgaggtt 22430894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 22442212 - 22442466
Alignment:
Q  50 tttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatc 149  Q
    |||||||||||||| | |||| ||||||||||||||||  ||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| |||     
T  22442212 tttttcaaggatcatttcatgcactagatcatgaacacggcaactttttactcttccatcaatactggttgaaactacttgcaccaaacttctacagatt 22442311  T
Q  150 aaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtag 249  Q
    ||  || |||||||||| |||||||| | |||||||||  || | | ||  |||||||| || |||||||| |||||||| ||| ||||| | |||| |     
T  22442312 aacacttttaaatatccttctgcaaccttttccaatgtcctttccccatattctttcacaaacccttcagctatccattgacgagtcaatgtctttgaac 22442411  T
Q  250 gaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgaggtt 304  Q
     | ||  | |  |||| |||||||||||||||||||| |||||||||||||||||    
T  22442412 aagcttcatagtcttcgggatataatccaaaatacaagaaacatgacttgaggtt 22442466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 22367363 - 22367648
Alignment:
Q  19 taatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaat 118  Q
    ||||| |||||||||| ||||| || |||  ||| | |||||||| |||||| ||||||||||||||||  ||||| | | |||||||||||||| | ||    
T  22367363 taatactcttgcaaaagcttaaatcctcatgtttattaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgat 22367462  T
Q  119 tgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttca 218  Q
       | ||||| ||||||||| ||||| |||||| ||| |||||| ||| |||||||| |||||||||||  || | || || |||||||| || ||||||    
T  22367463 cccatctactcgcaccaaacttctacggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttctttcacaaacccttca 22367562  T
Q  219 gccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgaggtt 304  Q
    || |||||||| ||| |||||||||||| | ||||  |  |  ||||||||||||||||||| ||||| |||||||||||||||||    
T  22367563 gcaatccattgacgagtcaatatatttgaacgaacatttgagtcttcaggatataatccaaagtacaagaaacatgacttgaggtt 22367648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 22353251 - 22353535
Alignment:
Q  19 taatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaat 118  Q
    |||||||||||||||||||||| || ||| |||||  |||||||| | |||| |||||||| ||||||| |||||||||| |||||||||||||||| |     
T  22353251 taatattcttgcaaaaacttaaatcctcatattttctaaggatcatttcatgcactagatcgtgaacacgacaactttttactcttccatcaatactgac 22353350  T
Q  119 tgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttca 218  Q
    |||| ||||||||||||||| ||||  ||| || ||| |||||||||| |||||||| ||||||| |||  || | |  |  |||||||| || || |||    
T  22353351 tgaatctacttgcaccaaacttctatggattaactcttttaaatatccttctgcaacctcttccattgtccttcccccgtattctttcacaaacccctca 22353450  T
Q  219 gccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgaggt 303  Q
    || |||||||| ||| ||||| ||| || |  ||||    |  ||||  ||||||||||||||||||| ||||||||||||||||    
T  22353451 gcaatccattgacgagtcaatgtatctgaataaacttcgtagtcttcgagatataatccaaaatacaagaaacatgacttgaggt 22353535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 22620319 - 22620599
Alignment:
Q  15 tcactaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatac 114  Q
    |||||||||| ||||||||||||||  || ||||| |||||||| ||||    | | | |||||||||||| ||||||||||||| | ||||||| || |    
T  22620319 tcactaatatacttgcaaaaacttagatcctcacacttttcaagtatcatcatacgtattagatcatgaacgcaacaactttttgtttttccatcgattc 22620418  T
Q  115 taattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatcc 214  Q
    | | ||||  |||||||||||||| ||||  |||||| |||||||| ||||| |||||||| |||||||| || ||  | || || ||||| || || ||    
T  22620419 ttagtgaagatacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattccccctttcttcttttacaaaccc 22620518  T
Q  215 ttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatga 295  Q
    |||||| |||||||||||||||||| | |||| |  |||| || || |||| |||||||||||||||||||| ||||||||    
T  22620519 ttcagctatccattgccgaatcaatctctttgaatcaactttataatcttctggatataatccaaaatacaataaacatga 22620599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 22656490 - 22656772
Alignment:
Q  16 cactaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatact 115  Q
    ||||||||| |||||| |||||||| || ||||| |||||||||||||    ||| | || |||||| |||||||||||||| | | |||| ||||| ||    
T  22656490 cactaatatgcttgcagaaacttaaatcctcacacttttcaaggatcatcatatgtattaaatcatggacacaacaacttttagtttttccgtcaattct 22656589  T
Q  116 aattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatcct 215  Q
    || |||   |||||| ||||||| ||  |  ||||| |||||||||||||| |||||||| |||||||| |||||  | || || |||||||| || |||    
T  22656590 aactgaggatacttgtaccaaacatcggcgaatcaactctgttaaatatccttctgcaacttcttccaaagttttccccctttcttctttcacaaaacct 22656689  T
Q  216 tcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgactt 298  Q
    ||||| ||||||||||| |||| | | ||||    ||||  | || |||| ||||||| ||||||||||||||||||||||||    
T  22656690 tcagctatccattgccgtatcactctctttgattcaacttcataatcttctggatatattccaaaatacaacaaacatgactt 22656772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 37930298 - 37930467
Alignment:
Q  19 taatattcttgcaaaaacttaattcttcacatttttc-aaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaa 117  Q
    ||||||||| |||||||||||| ||   | |||| || |||||||| | |||| |||||||||||||||| |||||||||| |||||||||||||||       
T  37930298 taatattctcgcaaaaacttaaatccataaatttgtcaaaggatcatttcatgcactagatcatgaacacgacaactttttactcttccatcaataccgg 37930397  T
Q  118 ttgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgt 187  Q
    ||||||||||||||||||||| ||||| ||| || ||| |||||||||| || ||||| | |||||||||    
T  37930398 ttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgcaaccttttccaatgt 37930467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 301
Target Start/End: Original strand, 30988739 - 30989014
Alignment:
Q  26 cttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaact 125  Q
    |||||||||| |||| || ||| |||||||||||||||   |  | | |||||||||||||| ||||| ||| ||| | |||||||  ||||  |||  |    
T  30988739 cttgcaaaaatttaaatcctcaaatttttcaaggatcatatcgcgtattagatcatgaacacgacaacctttagctttaccatcaactctaaccgaagat 30988838  T
Q  126 acttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatcc 225  Q
    ||||||||||| | ||||  |||||| |||||||||||||| |||||||| |||||||| || ||  | || || || |||||||| |||||||| | ||    
T  30988839 acttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacgtcttccaaagtcttccctctttcctccttcacgaacccttcagctaccc 30988938  T
Q  226 attgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgag 301  Q
    |||| ||||||||| | ||||    ||||  | || |||| ||||||| ||||||||||||||| |||||||||||    
T  30988939 attgtcgaatcaatctctttgatttaacttcataatcttctggatatattccaaaatacaacaagcatgacttgag 30989014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 22647602 - 22647776
Alignment:
Q  10 catcatcactaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatc 109  Q
    |||| |||||||||| |||||| |||||||  || ||||  |||||||||||||    ||| |  |||||||||||||| |||||||| | | |||||||    
T  22647602 catcttcactaatatgcttgcagaaacttatatcctcactcttttcaaggatcatcatatgtatcagatcatgaacacagcaacttttagtttttccatc 22647701  T
Q  110 aatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 184  Q
    ||| |||| ||||  |||||| ||||||| ||||  |||||| || ||||||||||  |||||||| ||||||||    
T  22647702 aattctaactgaagatacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaacttcttccaa 22647776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 21946608 - 21946445
Alignment:
Q  74 tagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgca 173  Q
    |||||||||||||| ||||| ||| ||| | |||||||| |||| ||||  |||||| ||||  | ||||  |||||| |||||||||||||| |||||     
T  21946608 tagatcatgaacacgacaacctttagctttaccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgttaaatatccttctgcc 21946509  T
Q  174 acatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 237  Q
    || |||||||| || ||  | || || || ||||| || |||||||| |||||||| |||||||    
T  21946508 acttcttccaaagtcttccctctttcctccttcacaaacccttcagctatccattgtcgaatca 21946445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 21931469 - 21931295
Alignment:
Q  10 catcatcactaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatc 109  Q
    ||||||||||||||| |||||||||| | || || |||  ||||| ||||||||   | || | |||||||||||||| ||||| ||| ||| | |||||    
T  21931469 catcatcactaatatgcttgcaaaaattaaaatcctcatgtttttgaaggatcatatcgtgtattagatcatgaacacgacaacctttagctttgccatc 21931370  T
Q  110 aatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 184  Q
    ||| |||| ||||  |||||| || |  | ||||  |||||| |||||||||||||| ||||| || ||||||||    
T  21931369 aattctaagtgaagatacttgaacgaggcttctatggatcaactctgttaaatatccttctgccacttcttccaa 21931295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 22180465 - 22180247
Alignment:
Q  10 catcatcactaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatc 109  Q
    ||||||||||||||| |||||||||| | || || |||  ||||| ||||||||   || | | |||||||||||||| ||||| ||| ||| | |||||    
T  22180465 catcatcactaatatgcttgcaaaaattaaaatcctcatttttttgaaggatcatatcacgtattagatcatgaacacgacaacctttagctttgccatc 22180366  T
Q  110 aatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacg 209  Q
    ||| ||||  |||  |||||| ||||  | ||||  |||||| ||||||| |||||| ||||| || ||||||| ||||||| |  | || || |||||     
T  22180365 aattctaagcgaagatacttgaaccaggcttctatggatcaactctgttagatatccctctgccacttcttccattgtttttcccttttcctccttcaca 22180266  T
Q  210 aatccttcagccatccatt 228  Q
    || |||||||| |||||||    
T  22180265 aacccttcagctatccatt 22180247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 301
Target Start/End: Complemental strand, 21938201 - 21937910
Alignment:
Q  10 catcatcactaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatc 109  Q
    |||||||||| |||| |||||||||| | || || |||  ||||||||||||||   || | | |||||||||||||| ||||| ||| ||| | |||||    
T  21938201 catcatcactgatatgcttgcaaaaattaaaatcctcatctttttcaaggatcatatcacgtattagatcatgaacacgacaacctttagctttgccatc 21938102  T
Q  110 aatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacg 209  Q
    ||| |||| |||   |||||| ||||  | ||||   ||||| ||||||| |||||| ||||| || |||||||  || ||| |  | || || |||||     
T  21938101 aattctaagtgaggatacttgaaccaggcttctatgtatcaactctgttagatatccctctgccacttcttccatagtctttcccttttcctccttcaca 21938002  T
Q  210 aatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaacatgacttgag 301  Q
    ||||||||||| |||||||| ||||| | | | ||||    || |  | || |||| ||||||| ||||||||||||||| |||||||||||    
T  21938001 aatccttcagctatccattgtcgaatgactctctttggtctaatttcaaaatcttctggatatactccaaaatacaacaagcatgacttgag 21937910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 22180208 - 22180174
Alignment:
Q  267 ggatataatccaaaatacaacaaacatgacttgag 301  Q
    ||||||| |||||||||||||||||||||||||||    
T  22180208 ggatatactccaaaatacaacaaacatgacttgag 22180174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 22614708 - 22614842
Alignment:
Q  29 gcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactact 128  Q
    |||||||||||| || | | ||||||||| |||||   || | | |||||||||||||| |||||||||  || ||||||||||| |||| |||   | |    
T  22614708 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 22614807  T
Q  129 tgcaccaaacctctactgatcaaatctgttaaata 163  Q
    |||||||||| |||| | ||||| |||| ||||||    
T  22614808 tgcaccaaacttctattaatcaactctgataaata 22614842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 22628096 - 22628182
Alignment:
Q  153 tctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 239  Q
    |||||||||||||| ||||  || ||||| || |||||| | || || |||||||| ||||||||||| ||| |||| |||||||||    
T  22628096 tctgttaaatatccttctgtgacttcttcgaaagtttttcccctttcttctttcacaaatccttcagctatcaattgtcgaatcaat 22628182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 34990249 - 34990046
Alignment:
Q  26 cttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaact 125  Q
    ||||||||||||||| || ||||| |||||||||||||    ||| |  ||||||||||||||||||||| | | | |||||||||| |||| |||   |    
T  34990249 cttgcaaaaacttaaatcctcacacttttcaaggatcatcatatgtatcagatcatgaacacaacaacttctagtttttccatcaatgctaactgaggat 34990150  T
Q  126 acttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatcc 225  Q
    ||||||||||||| |||||  ||||| |||||||||||||  ||| |||| |||||||| || ||  | || || |||||||| || |||||||| ||||    
T  34990149 acttgcaccaaacttctacgaatcaactctgttaaatatctttcttcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatcc 34990050  T
Q  226 attg 229  Q
    ||||    
T  34990049 attg 34990046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 2304969 - 2305131
Alignment:
Q  75 agatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaa 174  Q
    ||||||||||||||||||||||| | | |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||| ||||||||| |||||||    
T  2304969 agatcatgaacacaacaacttttagattttccatcaatgctaactgaggatacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaa 2305068  T
Q  175 catcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 237  Q
    | |||||||| || ||  | || || || ||||| || |||||||| ||||| || |||||||    
T  2305069 cttcttccaaagtcttcccactttcctccttcacaaacccttcagctatccactgtcgaatca 2305131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 34976403 - 34976245
Alignment:
Q  26 cttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaact 125  Q
    ||||||||||||||| || ||||| |||||||||||||    | | |  ||||||||||||||||||||||| |   |||||||||| |||| |||   |    
T  34976403 cttgcaaaaacttaaatcctcacacttttcaaggatcatcatacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggat 34976304  T
Q  126 acttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 184  Q
    ||||||||||||| || ||  ||||| |||||||||||||| | |||||| ||||||||    
T  34976303 acttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaa 34976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 34983514 - 34983356
Alignment:
Q  26 cttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaact 125  Q
    ||||||||||||||| || ||||| |||||||||||||    | | |  ||||||||||||||||||||||| |   |||||||||| |||| |||   |    
T  34983514 cttgcaaaaacttaaatcctcacacttttcaaggatcatcatacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggat 34983415  T
Q  126 acttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 184  Q
    ||||||||||||| || ||  ||||| |||||||||||||| | |||||| ||||||||    
T  34983414 acttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaa 34983356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 872147 - 872224
Alignment:
Q  15 tcactaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaa 92  Q
    |||||||||| |||||||||| |||| || ||| ||||||||||||||||  |||| | |||||||||||||| ||||    
T  872147 tcactaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaa 872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 1233424 - 1233501
Alignment:
Q  15 tcactaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaa 92  Q
    |||||||||| |||||||||| |||| || ||| ||||||||||||||||  |||| | |||||||||||||| ||||    
T  1233424 tcactaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaa 1233501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 40580966 - 40580766
Alignment:
Q  26 cttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaact 125  Q
    |||||||||||||||||| ||||| |||||| ||||||    | | |  | ||| |||||| |||||||||| | | |||||||||| ||||||||   |    
T  40580966 cttgcaaaaacttaattcctcacacttttcatggatcatcatacgtatcaaatcgtgaacaaaacaacttttagtttttccatcaattctaattgaggat 40580867  T
Q  126 acttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatcc 225  Q
    |||||||||||||  | ||  ||||| || ||||||||| | || ||||| |||||||| || ||| | || || || ||||| || |||||||| ||||    
T  40580866 acttgcaccaaactacgacgaatcaactcagttaaatatacttcagcaacttcttccaaagtctttccactttcctccttcacaaacccttcagctatcc 40580767  T
Q  226 a 226  Q
    |    
T  40580766 a 40580766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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