View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_low_16 (Length: 278)
Name: NF6341_low_16
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 19807897 - 19807651
Alignment:
| Q |
20 |
tggcttaaaaagagaatttgagttgattgaacatttcaaagatgagagtatttgtcattatttttcacgaatggacaagttggtcgagaaatgaacaatc |
119 |
Q |
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| T |
19807897 |
tggcttaaaaagacaatttgagttgattgaacatttcaaagatgaaagtatttgtcattatttttcacgaatggacaagttggtcgagaaatgaacaatc |
19807798 |
T |
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| Q |
120 |
gcagtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcat |
219 |
Q |
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| T |
19807797 |
gcagtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcat |
19807698 |
T |
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| Q |
220 |
tagcagcaattgaagagtcaaaagatctgaacacagcgacctagaat |
266 |
Q |
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| T |
19807697 |
tagcagcaattgaagagtcaaaagatctgaacacagcgacctagaat |
19807651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 19968690 - 19968775
Alignment:
| Q |
169 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatctgaacaca |
254 |
Q |
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| T |
19968690 |
aagtcatggagaaagttatgcgcacacaaacaagttgattcaattacgccgtagcagcaattcaagagtaaaaatatctaaacaca |
19968775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 17389692 - 17389634
Alignment:
| Q |
56 |
caaagatgagagtatttgtcattatttttcacgaatggacaagttggtcgagaaatgaa |
114 |
Q |
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| T |
17389692 |
caaagacgaaagtatttgtgattatttttcacgaatggataagttgtttgagaaatgaa |
17389634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 40031413 - 40031335
Alignment:
| Q |
169 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatct |
247 |
Q |
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||||||||||||| ||| ||| ||||||| |||| |||||||||||||| |||||||| | |||||||||||||||| |
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| T |
40031413 |
aagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaagatct |
40031335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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