View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_low_18 (Length: 271)
Name: NF6341_low_18
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 8791299 - 8791193
Alignment:
| Q |
10 |
ataatactacccctacaattttatgccaaattgggttaaaaatattaatgtgtatattcctctaccctctttatcttttctttaattgtaaatttgctat |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
8791299 |
ataacactacccctacaattttatgccaaattgggttaataatattaatgtgtatattcctctaccctctttatcttttctttaattgtagattttctat |
8791200 |
T |
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| Q |
110 |
acactta |
116 |
Q |
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||||||| |
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| T |
8791199 |
acactta |
8791193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 8791121 - 8791038
Alignment:
| Q |
188 |
ctccacatattatctatcttgtaggttttgcagtaacaaagtaatttcatttgattgatactcttcaatttgaatattttatat |
271 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8791121 |
ctccacataatatctatcttgtaggttttgcagtaacaaagtaatttcatttgattgatactcctcaatttgaatattttatat |
8791038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 14945445 - 14945490
Alignment:
| Q |
223 |
acaaagtaatttcatttgattgatactcttcaatttgaatatttta |
268 |
Q |
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| T |
14945445 |
acaaagtaacttcatttcatcgatactcttcaatttgaatatttta |
14945490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 14940203 - 14940248
Alignment:
| Q |
223 |
acaaagtaatttcatttgattgatactcttcaatttgaatatttta |
268 |
Q |
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||||||||| ||||||| || ||||||||||||||| ||||||||| |
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| T |
14940203 |
acaaagtaacttcatttcatcgatactcttcaatttcaatatttta |
14940248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 14950210 - 14950255
Alignment:
| Q |
223 |
acaaagtaatttcatttgattgatactcttcaatttgaatatttta |
268 |
Q |
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||||||||| ||||||| || ||||||||||||||| ||||||||| |
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|
| T |
14950210 |
acaaagtaacttcatttcatcgatactcttcaatttcaatatttta |
14950255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 14954451 - 14954496
Alignment:
| Q |
223 |
acaaagtaatttcatttgattgatactcttcaatttgaatatttta |
268 |
Q |
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||||||||| ||||||| || ||||||||||||||| ||||||||| |
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| T |
14954451 |
acaaagtaacttcatttcatcgatactcttcaatttcaatatttta |
14954496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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