View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_low_19 (Length: 268)
Name: NF6341_low_19
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 30724414 - 30724295
Alignment:
| Q |
1 |
tccgcatatagtgacagtacataatgtcaacaaattgtgtcaaaattacagactttcttaaaaataactacatatgagaataaacactctacaaatattg |
100 |
Q |
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| T |
30724414 |
tccgcatatagtgacagtacataatgtcaacaaattgtgtcaaaattacagactttcttaaaaataactacatatgagaataaacactctacaaatattg |
30724315 |
T |
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| Q |
101 |
cttcagaaatcaaatcaata |
120 |
Q |
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|||||||||||||||||||| |
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| T |
30724314 |
cttcagaaatcaaatcaata |
30724295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 30724260 - 30724141
Alignment:
| Q |
135 |
caattgatgcacatggttaacaatatgatctttatctcattataaagtatatatattccatgcttggtaccaacatgttcagtataagattaagtcgttt |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30724260 |
caattgatgcacatggttaacaatatgatctttatctcattataaagtatatatattccatgcttggtaccaacatgttcagtataagattaagtggttt |
30724161 |
T |
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| Q |
235 |
agtaaaatgatattattgtt |
254 |
Q |
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|||||||||||||||||||| |
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| T |
30724160 |
agtaaaatgatattattgtt |
30724141 |
T |
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