View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_low_20 (Length: 254)
Name: NF6341_low_20
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 28711085 - 28710864
Alignment:
| Q |
12 |
atgaacaaggaaactagaagtgtgaaacttgaatcaaaagcattgctatagtttgtaccgcgggttttaaatcagacgcagtcttcgcattatcggccat |
111 |
Q |
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| T |
28711085 |
atgaacaaggaaactagaagtgtgaaacttgaatcaaaagtattgctaaaggttgtaccgcgggttttaaatcagacgcagtcttcgcattatccgccat |
28710986 |
T |
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| Q |
112 |
tttacgaatttcataaaccagttctccatgcatatgcatttgctgtcatagagaataatattaaattaaataactacaatatagagaaagtaactaaaat |
211 |
Q |
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| T |
28710985 |
tttacgaatttcataaaccagttctccatgcatatgcatttgctgtcatagagaataatattaaattaaataactaaaatatagagaaagattctaaaat |
28710886 |
T |
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| Q |
212 |
tgtttgaataaataaccaatag |
233 |
Q |
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||| | |||| | ||||||||| |
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| T |
28710885 |
tgtatcaatataaaaccaatag |
28710864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 34106771 - 34106729
Alignment:
| Q |
12 |
atgaacaaggaaactagaagtgtgaaacttgaatcaaaagcat |
54 |
Q |
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| T |
34106771 |
atgaacaaggaaactaaaattctgaaacttgaatcaaaagcat |
34106729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 38648649 - 38648696
Alignment:
| Q |
12 |
atgaacaaggaaactagaagtgtgaaacttgaatcaaaagcattgcta |
59 |
Q |
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| T |
38648649 |
atgaacaaagaaactaaaattgtgaaacttgaatcaaaagcattgcta |
38648696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 48430878 - 48430914
Alignment:
| Q |
21 |
gaaactagaagtgtgaaacttgaatcaaaagcattgc |
57 |
Q |
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| T |
48430878 |
gaaactaaaattgtgaaacttgaatcaaaagcattgc |
48430914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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