View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_low_21 (Length: 252)
Name: NF6341_low_21
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 39088565 - 39088743
Alignment:
| Q |
64 |
atatttttactgttcactaaagaaacaaaaaataattaagtagctaattaatcttttttggttcaagtagttaattaatctttaacaaggttgagtaata |
163 |
Q |
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| T |
39088565 |
atatttttactgttcactaaagaaacaaaaaataattaagtagctaattaatcttttttggttcaagtagttaattaatctttaacaaggttgagtaata |
39088664 |
T |
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| Q |
164 |
tattaagagagttacccaggttgggggattttcagtaggaccatccaatccaatatgtgccacatgctttacatctgtg |
242 |
Q |
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| T |
39088665 |
tattaagagagttacccaggttgggggattttcagtaggaccatccaatccaatatgtgccacatgctttacatctgtg |
39088743 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 15587662 - 15587632
Alignment:
| Q |
211 |
atccaatatgtgccacatgctttacatctgt |
241 |
Q |
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| T |
15587662 |
atccaatatgtgccacatgctttacatctgt |
15587632 |
T |
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