View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6341_low_23 (Length: 247)
Name: NF6341_low_23
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 1726397 - 1726619
Alignment:
| Q |
14 |
cattgagaatctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaagggatatctactaagctcttcaagttgttgagtc |
113 |
Q |
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| T |
1726397 |
cattgagaatctaataagttacctcaagtatcatgagatggagcttgttggagatgaatccgctaagggaaatctactaagctcttcaagttgttgagtc |
1726496 |
T |
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| Q |
114 |
agaagagactctagatggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaagaagaaaaatgtt |
213 |
Q |
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| T |
1726497 |
agaagagactctagatggagaatctgaagatgggttagatgctga---------atttctgaccaaaatattcaagtaccttaccaagaagaaaaatgtt |
1726587 |
T |
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| Q |
214 |
tccaactagaactagtggatctaaaggatcag |
245 |
Q |
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| T |
1726588 |
tccaactagaactagtggatctaaaggatcag |
1726619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 13293218 - 13293280
Alignment:
| Q |
18 |
gagaatctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaag |
80 |
Q |
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| T |
13293218 |
gagaatctgataagctccctcaaatatcatgagattgagcttgttggagatgaacctgctaag |
13293280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 17235888 - 17235817
Alignment:
| Q |
128 |
atggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaa |
200 |
Q |
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| T |
17235888 |
atggagaatctgaagatga-ttagatgctaaagagatgacatttctgaccaaaagatatcagtacctgaccaa |
17235817 |
T |
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