View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6341_low_25 (Length: 244)
Name: NF6341_low_25
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6341_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 1727001 - 1726784
Alignment:
| Q |
17 |
agattcctctgccactaaatcatatttcctttgtnnnnnnnnttaagttttatgatttgataagacaacgacatagaattgacaacctcttcgcgagtca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1727001 |
agattcctctgccactaaatcatatttcctttgtaaaaaaaattaaactttttgatttgctaagacaacgacatagaattgacaacctcttcgcgagtca |
1726902 |
T |
|
| Q |
117 |
gtttagaaaatacttcatcatcatcatcataatctacttcagattctacatcataaattgttgaagccatcaaagtcataatggcttcttcttcattagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1726901 |
gtttagaaaatacttcatcatcatcatcatcatctacttcagattctacatcataagttgttgaagccatcaaagtcatattggcttcttcttcattagt |
1726802 |
T |
|
| Q |
217 |
ttcttcatcaagttcatc |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1726801 |
ttcttcatcaagttcatc |
1726784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 15668676 - 15668581
Alignment:
| Q |
121 |
agaaaatacttcatcatcatcatcataatctacttcagattctacatcataaattgttgaagccatcaaagtcataatggcttcttcttcattagt |
216 |
Q |
| |
|
|||||||| || ||||||| || | |||| |||||||||||||||||| || | |||||||||||||| | || | ||||||||||||||||||| |
|
|
| T |
15668676 |
agaaaataatttatcatcagaatgaaaatcaacttcagattctacatcagaagtcgttgaagccatcaatgccaaattggcttcttcttcattagt |
15668581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 11450499 - 11450463
Alignment:
| Q |
111 |
gagtcagtttagaaaatacttcatcatcatcatcata |
147 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
11450499 |
gagtcagtttagagaatacctcatcatcatcatcata |
11450463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University