View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6341_low_8 (Length: 336)

Name: NF6341_low_8
Description: NF6341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6341_low_8
NF6341_low_8
[»] chr3 (20 HSPs)
chr3 (19-314)||(22458779-22459074)
chr3 (19-314)||(22481760-22482055)
chr3 (71-312)||(22468240-22468481)
chr3 (85-312)||(22431444-22431670)
chr3 (71-312)||(22630731-22630972)
chr3 (178-312)||(22358294-22358428)
chr3 (178-312)||(22635795-22635929)
chr3 (177-286)||(22368230-22368339)
chr3 (190-304)||(22436934-22437048)
chr3 (71-265)||(22632204-22632398)
chr3 (261-314)||(22615549-22615602)
chr3 (100-308)||(22443035-22443243)
chr3 (196-302)||(22179475-22179581)
chr3 (201-302)||(30989607-30989708)
chr3 (196-302)||(22028058-22028164)
chr3 (196-302)||(22115143-22115249)
chr3 (196-302)||(22187046-22187152)
chr3 (196-313)||(22657357-22657474)
chr3 (196-302)||(21937211-21937317)
chr3 (196-302)||(21945682-21945788)
[»] chr4 (2 HSPs)
chr4 (211-318)||(29610857-29610961)
chr4 (72-159)||(29611001-29611088)
[»] chr1 (2 HSPs)
chr1 (261-318)||(34980285-34980342)
chr1 (261-313)||(2305776-2305828)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 22459074 - 22458779
Alignment:
Q  19 caatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22459074 caatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtag 22458975  T
Q  119 gctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaac 218  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458974 gctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaac 22458875  T
Q  219 aactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaagg 314  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458874 aactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaagg 22458779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 22482055 - 22481760
Alignment:
Q  19 caatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22482055 caatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtag 22481956  T
Q  119 gctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaac 218  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481955 gctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaac 22481856  T
Q  219 aactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaagg 314  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481855 aactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaagg 22481760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 312
Target Start/End: Complemental strand, 22468481 - 22468240
Alignment:
Q  71 agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagaga 170  Q
    ||||||||||| | |||| ||||| ||| ||||||| |||| |||| || |||||||  ||| || ||| | | ||||||| |||||||||||  ||||     
T  22468481 agaaccttcgagacgctccattttatatggatgaagctgatcttgtgggatttgaagagccacgagacaaattgattgatttgttggtagagggaagagc 22468382  T
Q  171 agtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgat 270  Q
    || || |||  ||||| |||| ||||||| ||||||||  |||||||| ||| | || ||||| ||||||||| |  | ||| |||||||||| ||||||    
T  22468381 agagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgttaaacattttgat 22468282  T
Q  271 tgtcatgtatggatcagagtgtctcaatcatacaatatagaa 312  Q
    ||||||||||||||||  ||||||| | ||||||||||||||    
T  22468281 tgtcatgtatggatcacggtgtctcgaccatacaatatagaa 22468240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 312
Target Start/End: Complemental strand, 22431670 - 22431444
Alignment:
Q  85 gctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattg 184  Q
    |||| ||||| ||| ||||||| ||||||||| || |||||||  |||||| ||||| | ||||||||| ||||| | |  | ||||| || |||| | |    
T  22431670 gctccattttatatggatgaagctgatgttgtgggatttgaagagccaagagacatattgattgattggctggtaaatggaaaagaagagctcacagtgg 22431571  T
Q  185 tcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggat 284  Q
    || ||||||| |||| ||||||||  |||||||| |||||  | ||||| ||||||||| | |||| | || |||||||||||||||||| | |||||||    
T  22431570 tctccattgt-ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggat 22431472  T
Q  285 cagagtgtctcaatcatacaatatagaa 312  Q
    || |||||||||| ||||  ||||||||    
T  22431471 cacagtgtctcaaccatatgatatagaa 22431444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 71 - 312
Target Start/End: Complemental strand, 22630972 - 22630731
Alignment:
Q  71 agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagaga 170  Q
    ||||||||||| | |||| ||| | | | ||||||| ||||||||| |||||||| |  ||| || ||| | | ||||||||| || ||||||  ||||     
T  22630972 agaaccttcgagatgctccattgtatttggatgaagctgatgttgtgggctttgacgagccacgagacaaattgattgattggctgatagagggaagagc 22630873  T
Q  171 agtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgat 270  Q
    ||  | |||| ||||| | |||||||||| ||||||||  || ||||| |||||||| |||||  |||||||| |    ||| |||||||||||||||||    
T  22630872 agaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgttaaacactttgat 22630773  T
Q  271 tgtcatgtatggatcagagtgtctcaatcatacaatatagaa 312  Q
    ||||||| ||||||||  ||||||| | ||||||||||||||    
T  22630772 tgtcatgaatggatcacggtgtctcgaccatacaatatagaa 22630731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 22358428 - 22358294
Alignment:
Q  178 acaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatg 277  Q
    ||||||||| |||||||||||| ||||||||  |||||||| ||||| |||||||| ||||||||| |    ||| |||| |||||||||||| ||| ||    
T  22358428 acaattgtctccattgttggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaacactttgatcgtcgtg 22358329  T
Q  278 tatggatcagagtgtctcaatcatacaatatagaa 312  Q
    ||||||| |  ||||||| | ||||||||| ||||    
T  22358328 tatggattacggtgtctcgaccatacaatacagaa 22358294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 22635929 - 22635795
Alignment:
Q  178 acaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatg 277  Q
    ||||||||| ||||  |||||| |||||||||||||||||| ||||| |||||||| ||||||||| |    ||| |||| ||| |||||||||||| ||    
T  22635929 acaattgtctccatctttggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaatactttgattgtcgtg 22635830  T
Q  278 tatggatcagagtgtctcaatcatacaatatagaa 312  Q
    ||||||| |  ||||||| | ||||||||| ||||    
T  22635829 tatggattacggtgtctcgaccatacaatacagaa 22635795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 22368339 - 22368230
Alignment:
Q  177 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcat 276  Q
    |||| ||||| |||||||||||| ||||||||  |||||||| ||||| || ||||| ||||||||| |  | ||| ||||||||||||||||||||| |    
T  22368339 cacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtcgttaaacactttgattgtcgt 22368240  T
Q  277 gtatggatca 286  Q
     |||||||||    
T  22368239 ttatggatca 22368230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 22437048 - 22436934
Alignment:
Q  190 attgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagag 289  Q
    ||||| |||| |||||| ||||||||||| ||||| || ||||| ||||||||  | | |||  || | ||||| ||||| |||||||||||||||| ||    
T  22437048 attgtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaacaatttgactgtcatgtatggatcacag 22436949  T
Q  290 tgtctcaatcataca 304  Q
    |||||||||||||||    
T  22436948 tgtctcaatcataca 22436934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 265
Target Start/End: Complemental strand, 22632398 - 22632204
Alignment:
Q  71 agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagaga 170  Q
    ||||||||||| | |||| ||||| ||| ||||||| ||||||||| || |||||||  |||| | | | ||||||| ||||| |||||||||  ||||     
T  22632398 agaaccttcgagacgctccattttatatggatgaagctgatgttgtgggatttgaagagccaatagagaaactaattaattggctggtagagggaagagc 22632299  T
Q  171 agtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacact 265  Q
    ||  | |||| ||||| ||||| |||||| ||||||||  || ||||| ||||| || ||||| ||||||||| |    ||||||||||||||||    
T  22632298 agatcgcacagttgtctccattattggaatgggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaagatcgttaaacact 22632204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 22615602 - 22615549
Alignment:
Q  261 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaagg 314  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  22615602 acactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagg 22615549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 308
Target Start/End: Complemental strand, 22443243 - 22443035
Alignment:
Q  100 gatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccattgttggaa 199  Q
    ||||||| |||| |||| ||||||||||  |||||| ||| | | ||||||| |||||||||||  |||||||  | |||| ||||| ||||||||||||    
T  22443243 gatgaagctgatattgttggctttgaagagccaagagacaaattgattgatttgttggtagagggaagagaagaccgcacagttgtctccattgttggaa 22443144  T
Q  200 agggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatc 299  Q
     |||||||   |||||||| ||||| || |   |  |||||||| |  | ||| | ||||| |||||||| |||| | |||||||||  |||||||||||    
T  22443143 tgggaggattgggaaaaaccactctagccagacaaatttttgacaaccaaaaggtagttaagcactttgactgtcttttatggatcatggtgtctcaatc 22443044  T
Q  300 atacaatat 308  Q
    || ||||||    
T  22443043 attcaatat 22443035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 22179475 - 22179581
Alignment:
Q  196 ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc 295  Q
    |||| |||||| ||||||||||||||||| || ||||| |||||||||   ||  | ||| ||  |||||||||||||| ||||||||| | ||||||||    
T  22179475 ggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacactttgattgtcgtgtatggattacagtgtctc 22179574  T
Q  296 aatcata 302  Q
    |||||||    
T  22179575 aatcata 22179581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 302
Target Start/End: Complemental strand, 30989708 - 30989607
Alignment:
Q  201 gggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatca 300  Q
    |||||| ||||| ||||| |||||| ||||||| ||||||||| | |  ||  || ||  |||||||||||||| ||||||||||| |||||||||||||    
T  30989708 gggagggcaaggtaaaaccactcttacgaagaaagtttttgacaacaggaatgtcattggacactttgattgtcgtgtatggatcatagtgtctcaatca 30989609  T
Q  301 ta 302  Q
    ||    
T  30989608 ta 30989607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 22028058 - 22028164
Alignment:
Q  196 ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc 295  Q
    |||| |||||| ||||||||||||||||| || ||||| |||||||||   ||  | ||| |   |||||||||||||| ||||||||| | ||||||||    
T  22028058 ggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggacactttgattgtcgtgtatggattacagtgtctc 22028157  T
Q  296 aatcata 302  Q
    |||||||    
T  22028158 aatcata 22028164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 22115143 - 22115249
Alignment:
Q  196 ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc 295  Q
    |||| |||||| ||||||||||| |||||  | ||||| |||||||||   ||  | ||| ||  |||||||||||||| ||||||||||| ||||||||    
T  22115143 ggaatgggagggcaaggaaaaaccactctatcaaagaaagtttttgacagcaaggatatcattggacactttgattgtcgtgtatggatcacagtgtctc 22115242  T
Q  296 aatcata 302  Q
    |||||||    
T  22115243 aatcata 22115249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 22187046 - 22187152
Alignment:
Q  196 ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc 295  Q
    |||| |||||| ||||||||||||||||| || ||||| |||||||||   ||  | ||| |   |||||||||||||| ||||||||| | ||||||||    
T  22187046 ggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggacactttgattgtcgtgtatggattacagtgtctc 22187145  T
Q  296 aatcata 302  Q
    |||||||    
T  22187146 aatcata 22187152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 22657474 - 22657357
Alignment:
Q  196 ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc 295  Q
    |||| |||||| ||||||||||| |||||||| || || |||||||||   ||  || | |||  ||||||||| |||| ||| ||||||| |||||| |    
T  22657474 ggaatgggagggcaaggaaaaactactcttgctaaaaaagtttttgacagcaaagaggttgttggacactttgaatgtcgtgtttggatcacagtgtcac 22657375  T
Q  296 aatcatacaatatagaag 313  Q
    |||| |||||||||||||    
T  22657374 aatcttacaatatagaag 22657357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 21937211 - 21937317
Alignment:
Q  196 ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc 295  Q
    |||| |||||| ||||||||||| ||||| || ||||| | |||||||   ||  |  |||||  |||||||||||||| ||||||||||| ||||||||    
T  21937211 ggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgttggacactttgattgtcgtgtatggatcacagtgtctc 21937310  T
Q  296 aatcata 302  Q
    || ||||    
T  21937311 aagcata 21937317  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 21945682 - 21945788
Alignment:
Q  196 ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc 295  Q
    |||| |||||| ||||||||||| ||||| || ||||| |||||||||   ||  |  || ||  |||||||||||||| |||||||||||  |||||||    
T  21945682 ggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgtcatttgacactttgattgtcttgtatggatcactgtgtctc 21945781  T
Q  296 aatcata 302  Q
    |||||||    
T  21945782 aatcata 21945788  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 29610961 - 29610857
Alignment:
Q  211 ggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatag 310  Q
    |||||||| |||||  | ||||| |||||||||   |||||| ||||| ||||||||||   || ||||||||||| ||| || ||||||||||||||||    
T  29610961 ggaaaaactactctaactaagaaagtttttgac---aacaaggtcgttgaacactttgacaatcgtgtatggatcacagtatcacaatcatacaatatag 29610865  T
Q  311 aaggattg 318  Q
    ||||||||    
T  29610864 aaggattg 29610857  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 29611088 - 29611001
Alignment:
Q  72 gaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggta 159  Q
    ||||||||||||||||| |||||  || ||||||| ||| |||| |||||||||||  |||||| | ||| ||||||||||| |||||    
T  29611088 gaaccttcgaaaggctccattttacatggatgaagctgacgttgcaggctttgaagagccaagagaaatattaattgattggctggta 29611001  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 34980285 - 34980342
Alignment:
Q  261 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattg 318  Q
    ||||||||| |||| ||||||||||| |||||| |||||||||||||| |||| ||||    
T  34980285 acactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagtattg 34980342  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 2305828 - 2305776
Alignment:
Q  261 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaag 313  Q
    ||||||||| |||| ||||||||||| | |||| |||||||||||||||||||    
T  2305828 acactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaag 2305776  T

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