View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6342_low_1 (Length: 422)

Name: NF6342_low_1
Description: NF6342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6342_low_1
NF6342_low_1
[»] chr6 (4 HSPs)
chr6 (152-419)||(7641896-7642162)
chr6 (315-401)||(7631131-7631217)
chr6 (164-217)||(22996953-22997006)
chr6 (164-217)||(23791395-23791448)
[»] chr4 (3 HSPs)
chr4 (141-252)||(34290808-34290919)
chr4 (70-120)||(34290726-34290776)
chr4 (194-246)||(34290732-34290784)
[»] chr2 (1 HSPs)
chr2 (141-229)||(41324909-41324997)
[»] chr5 (1 HSPs)
chr5 (152-229)||(5045142-5045219)
[»] chr8 (1 HSPs)
chr8 (88-120)||(41667884-41667916)
[»] chr1 (1 HSPs)
chr1 (137-229)||(17322098-17322190)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 152 - 419
Target Start/End: Original strand, 7641896 - 7642162
Alignment:
Q  152 tgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaaaagatgtgagaataacatcact 251  Q
    |||||||||||||||||||||||| ||||||||||| |||  ||||||| |||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  7641896 tgacttcaaaacagaaaaccaatgatagttaactaccgttaaattttttgatcatttc-atatatttctaagaaacaaaggacgtgagaacaacatcact 7641994  T
Q  252 cttaaaaattgaggtttgtaaccaaaactaaagtcatttgcaaatgaaaatggtagtggggtgggattagacttaccaaaagtggaagtggcttcaatag 351  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7641995 cttaaaagttgaggttagtaaccaaaactaaagtcatttgcaaatgaaagtggtagtggggtgggattagacttaccaaaagtggaagtggcttcaatag 7642094  T
Q  352 aaatgtcatgccactttgacaaagttgagactctaattgtgattatctcctcacttttcgtgctctct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7642095 aaatgtcatgccactttgacaaagttgagactctaattgtgattatctcctcacttttcttgctctct 7642162  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 7631131 - 7631217
Alignment:
Q  315 ggattagacttaccaaaagtggaagtggcttcaatagaaatgtcatgccactttgacaaagttgagactctaattgtgattatctcc 401  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7631131 ggattagacttaccaaaagttgaagtttcttcaatagaaatgtcatgccactttgacatagttgagactctaattgtgattatctcc 7631217  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 22997006 - 22996953
Alignment:
Q  164 agaaaaccaatggtagttaactacagttggattttttaatcatttccatatatt 217  Q
    |||||||| | |||||||||||||||||||||||||   |||||||||| ||||    
T  22997006 agaaaaccgacggtagttaactacagttggatttttcggtcatttccatgtatt 22996953  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 23791395 - 23791448
Alignment:
Q  164 agaaaaccaatggtagttaactacagttggattttttaatcatttccatatatt 217  Q
    |||||||| | |||||||||||||||||||||||||   |||||||||| ||||    
T  23791395 agaaaaccgacggtagttaactacagttggatttttcggtcatttccatgtatt 23791448  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 252
Target Start/End: Original strand, 34290808 - 34290919
Alignment:
Q  141 ttaactatcactgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaaaagatgtgaga 240  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||   |  ||||||   |||||||||||| ||| |||||||||| |||||| |||    
T  34290808 ttaactatcactgacttcaaaacagaaaaccgacggtagttaactaccacttaatttttgggtcatttccatatgtttttaagaaacaatagatgtaaga 34290907  T
Q  241 ataacatcactc 252  Q
    | |||| |||||    
T  34290908 acaacaacactc 34290919  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 34290726 - 34290776
Alignment:
Q  70 gaaagttgatgttctcaaatctattgtttcttagaaacacataaaaatgat 120  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  |||||||    
T  34290726 gaaagttgttgttctcacatccattgtttcttagaaacacatggaaatgat 34290776  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 34290784 - 34290732
Alignment:
Q  194 attttttaatcatttccatatatttctaagaaacaaaagatgtgagaataaca 246  Q
    ||||||| ||||||||||| | ||||||||||||||  |||||||||| ||||    
T  34290784 atttttttatcatttccatgtgtttctaagaaacaatggatgtgagaacaaca 34290732  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 41324997 - 41324909
Alignment:
Q  141 ttaactatcactgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaa 229  Q
    ||||||||||||||||||||| ||||||| |   ||||||||||||| | |||| |||||  | ||||| || | ||||||||||||||    
T  41324997 ttaactatcactgacttcaaagcagaaaatcggcggtagttaactactgctggactttttggtaatttcaatgtgtttctaagaaacaa 41324909  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 5045219 - 5045142
Alignment:
Q  152 tgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaa 229  Q
    ||||||||||||||||||   ||||||||||||||| | |  | |||||| ||||||| || ||| ||||||||||||    
T  5045219 tgacttcaaaacagaaaattgatggtagttaactaccgctaaaatttttagtcatttctatgtatctctaagaaacaa 5045142  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 41667884 - 41667916
Alignment:
Q  88 atctattgtttcttagaaacacataaaaatgat 120  Q
    |||||||||||||||||||||||| ||||||||    
T  41667884 atctattgtttcttagaaacacatgaaaatgat 41667916  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 17322190 - 17322098
Alignment:
Q  137 gtaattaactatcactgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaa 229  Q
    ||||||||||||   || ||| ||| ||||||||||  |||||||||||||   ||  |||||| ||||||||||| | ||||||||||||||    
T  17322190 gtaattaactattgttggctttaaagcagaaaaccagcggtagttaactaccactgagttttttgatcatttccatttgtttctaagaaacaa 17322098  T

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