View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_high_12 (Length: 304)
Name: NF6343_high_12
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 26577923 - 26577631
Alignment:
| Q |
1 |
ttcattgaaacatcgaagcacacaattttcaaagggtaatatcagaatagaaataaaatgtgcat--gtgtttcaaatttaattcggaacggttggaatt |
98 |
Q |
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||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26577923 |
ttcattgaaacatcggatcacacaatttgcaaagggtaatatcagaatagaaataaaatgtgcatatgtgtttcaaatttaattcggaacggttggaatt |
26577824 |
T |
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| Q |
99 |
taattttgagacatatcgatatctcttattttagaatgagaaaaattaagatataaggcttgcgggtgatggatggcgtatgtatgtgttagcagttaaa |
198 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26577823 |
taattttgagacatattgatatctcttattttagaatgagaaaaattaagatataaggcttgcgggtgatggatggcgtatgtatgtgttagcagttaaa |
26577724 |
T |
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| Q |
199 |
tacgagactgagaaagggcgaattaacagagggggttggttgtcttctgtgtggtggaaagacttttgtgatattcttgaaggtgaggatgat |
291 |
Q |
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| T |
26577723 |
tacgaaactgagaaagggcgaattaacagagggggttggttgtcttctgtgtggtggaaagacttgtgtgatattcttgaaggtgaggatgat |
26577631 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 16126589 - 16126542
Alignment:
| Q |
236 |
ggttgtcttctgtgtggtggaaagacttttgtgatattcttgaaggtg |
283 |
Q |
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||||||| |||||||||||||| ||||| |||||||||||||| |||| |
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| T |
16126589 |
ggttgtcctctgtgtggtggaaggacttatgtgatattcttgagggtg |
16126542 |
T |
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