View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_high_19 (Length: 205)
Name: NF6343_high_19
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 14176633 - 14176456
Alignment:
| Q |
8 |
catcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgt |
107 |
Q |
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| T |
14176633 |
catcatcaccatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgt |
14176534 |
T |
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| Q |
108 |
aagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactac |
185 |
Q |
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| T |
14176533 |
aagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactac |
14176456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 28609243 - 28609420
Alignment:
| Q |
8 |
catcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
28609243 |
catcatcaccatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgt |
28609342 |
T |
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| Q |
108 |
aagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactac |
185 |
Q |
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| T |
28609343 |
aagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgcttatgaaacactac |
28609420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 12933363 - 12933186
Alignment:
| Q |
8 |
catcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgt |
107 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
12933363 |
catcatcaccatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgt |
12933264 |
T |
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| Q |
108 |
aagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactac |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12933263 |
aagatcaaccttaccataacgtttaggtgtttctagaatagtagaatctgacatagtttcttgctcatgaaacactac |
12933186 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 15299151 - 15298976
Alignment:
| Q |
10 |
tcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgtaa |
109 |
Q |
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||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
15299151 |
tcatcaccatcttcaactactaactcaccattaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaactgtaa |
15299052 |
T |
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| Q |
110 |
gatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactac |
185 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15299051 |
gatcaaccttaccataacgtttaggtgtttctggaatagcagaatctgacatagtttcttgctcatgaaacactac |
15298976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 38994904 - 38995074
Alignment:
| Q |
10 |
tcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgtaa |
109 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||| || |||||||| |||||||||| | |||||||||| |||||| ||||| ||||||| |
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| T |
38994904 |
tcatcaccatcttcaattgttggctcaccatcaaccctagggttttaatcaagatctcccccttctttggcaactcttataggaggagtggttagtgtaa |
38995003 |
T |
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| Q |
110 |
gatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaaca |
181 |
Q |
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| |||||||||||| | ||||||||||| |||||| | ||| || ||||||||||||||||||||||| |
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| T |
38995004 |
ggtcaaccttaccaccgtgcttaggtgtttcaggaatagta-aatttgtcatagtttcttgctcatgaaaca |
38995074 |
T |
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