View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_high_2 (Length: 513)
Name: NF6343_high_2
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Original strand, 44332997 - 44333478
Alignment:
| Q |
19 |
attgtgtaggtaaatgtaagaaaaagaaaatgaaagcaatattgtacctgatgatgagtttccctgtgaagaaggtaatctaaaatcagtaatatttctc |
118 |
Q |
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| T |
44332997 |
attgtgtaggtaaatgtaagaaaaagaaaatgaaagcaatattgtacctgatgatgagtttccctgtgaagaaggtaatctaaaatcagcaatatttctc |
44333096 |
T |
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| Q |
119 |
atatcttgttgagaagaaccaccaacagcatcatcactcttaagaagaccatcttcacgcactcttttatgtccaacccatgaactagaccccaaaagag |
218 |
Q |
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| T |
44333097 |
atatcttgttgagaagaaccaccaacagaatcatcactcttaagaagaccatcttcacgcactcttttatgtccaacccatgaactagaccccaaaagag |
44333196 |
T |
|
| Q |
219 |
cagcactagaagaatacatacgaggagaattagaactagaagagacagggacaaaacctgacatcattggaaaataaccacttccttgttggacttggac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44333197 |
cagcactagaagaatacatacgaggagaattagaactagaagagacagggacaaaacctgacatcattggaaaatagccacttccttgttggacttggac |
44333296 |
T |
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| Q |
319 |
ccactcattttgggcctggcccaatccatgctgagtcggcgctgaaaccataggacaagacattgccacctccccatactgctgttggttcaatccatgt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44333297 |
ccactcattttgggcctggcccaatccatgctgagtcggcgctgaaaccataggacaagacattgccacctccccatactgctgttggttcaatccatgt |
44333396 |
T |
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| Q |
419 |
gatcctgaagcttcttcctctttctcatcaccaccatgttcctcctccttcaacctcacgaactttcctgaatccctttgct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44333397 |
gatcctgaagcttcttcctctttctcatcaccaccatgttcctcctccttcaacctcacgaactttcctgaatccctttgct |
44333478 |
T |
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