View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_high_3 (Length: 473)
Name: NF6343_high_3
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 5917310 - 5916862
Alignment:
| Q |
17 |
cattgatgcttcagttctattgcatcctgaatagtgtactgtcatgataacctgcttagattacctctccaatttttctgcagatgatgatgacatatca |
116 |
Q |
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| T |
5917310 |
cattgatgcttcagttccattgcatcctgaatagtgtactgtcatgataacctgcttagattacctctccaatttttctgcagatgatgatgacatatca |
5917211 |
T |
|
| Q |
117 |
ggagaaacgtgaacactgatacaagaagccttgatggaattcaaagctggattaatgactaaaatgaatcaagtatgaaa-tggattctgaattgctgca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
5917210 |
ggagaaacgtgaacactgatacaagaagccttgatggaattcaaagctggattaaggactaaaatgaatcaagtatgaaaatcgattctgaattgctgca |
5917111 |
T |
|
| Q |
216 |
agctgatggattaggaatcagattcgcaagctgattaatcaccatatgatcagcttccgacgtatatagcataataaagatttgtaagctttctttcaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5917110 |
agctgatggattaggaatcagattcgcaagctgattaatcaccatatgatcagcttccgacgtatatagcataataaagatttgtaagctttctttcaac |
5917011 |
T |
|
| Q |
316 |
aaccagttggaccaaaccactttacaaacagtcccatgatgctgatcagtggaaggaatttaagttgggaagattagtttacttttcttacccttaccag |
415 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5917010 |
aaccagttggaccaaaccactttacaaacaatcccatgatgctgatcagtgaaaggaatttaagttgggaagattagtttacttttcttacccttaccag |
5916911 |
T |
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| Q |
416 |
gaaaagtgtaagttcaaagacaagacattaatgcatgtttccctaccta |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5916910 |
gaaaagtgtaagttcaaagacaagacattaatgcatgtttccctaccta |
5916862 |
T |
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