View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_high_4 (Length: 448)
Name: NF6343_high_4
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 33238089 - 33237653
Alignment:
| Q |
1 |
tgatgatgaagaaggaacctatcatcaaagaagaaagcaaatcggaggaagtattctcgccaacccaggtgtgattaagggcaacaataatggtaattta |
100 |
Q |
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| T |
33238089 |
tgatgatgaagaaggaacctatcatcaaagaagaaagcaaatcggaggaagtattctcgccaacccaggtgtgattaagggcaacaataatggtaattta |
33237990 |
T |
|
| Q |
101 |
gttgtgaacaagctttcccttggaggaggtaactaactctagggggactttgtttcttaaatttagtttgtgccaataattttatatatatgttgatgtt |
200 |
Q |
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| T |
33237989 |
gttgtgaacaagcttttccttggaggaggtaactaactctggggggactttgtttcttaaatttagtttgtgccaataattttatatatatgttgatgtt |
33237890 |
T |
|
| Q |
201 |
tgcaattta--gtttgtttttaaaatttagtttgtgccaacagcctattaggatgtccatatatgttatatgctttcgtaataatctgcaatcttaaatc |
298 |
Q |
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| T |
33237889 |
tgcaatttatagtttgtttttaaaatttagtttgtgccaacagcctattagggtgtccatatatatttaatgctttcgtaataatctgcaatcttaaatc |
33237790 |
T |
|
| Q |
299 |
ttctatttgtaatatactagtgttgagaatatttgcaacacacatataatgataagttatgaactattctatgtataagattggcgttacttgggataaa |
398 |
Q |
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| T |
33237789 |
ttctatttgtaatatactagtgttgagaatatgtgcaacacacatataatgataagttatgaactattctatgtataagattggcgttacttgggataaa |
33237690 |
T |
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| Q |
399 |
gatttacagcgtgattaacatggttttagtaagaact |
435 |
Q |
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| T |
33237689 |
gatttacagcgtgattaacatggttttagtaagaact |
33237653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 33246268 - 33246338
Alignment:
| Q |
247 |
taggatgtccatatatgttatatgctttcgtaataatctgcaatcttaaatcttctatttgtaatatacta |
317 |
Q |
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|||||||||||||| | | |||||||| |||||||| |||||| |||||||||||| |||||||||||| |
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| T |
33246268 |
taggatgtccatatttagtctatgcttttgtaataatatgcaattataaatcttctatatgtaatatacta |
33246338 |
T |
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