View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6343_high_5 (Length: 437)

Name: NF6343_high_5
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6343_high_5
NF6343_high_5
[»] chr3 (3 HSPs)
chr3 (17-423)||(45660532-45660938)
chr3 (89-140)||(26599444-26599495)
chr3 (91-139)||(3869840-3869888)
[»] chr8 (3 HSPs)
chr8 (310-395)||(2379594-2379679)
chr8 (89-174)||(9126479-9126560)
chr8 (90-132)||(34694592-34694634)
[»] chr4 (1 HSPs)
chr4 (90-144)||(6427114-6427168)
[»] chr1 (1 HSPs)
chr1 (89-157)||(37047106-37047173)
[»] scaffold0015 (1 HSPs)
scaffold0015 (89-139)||(72542-72592)
[»] chr5 (2 HSPs)
chr5 (89-139)||(31206374-31206424)
chr5 (99-139)||(16247027-16247067)
[»] chr7 (1 HSPs)
chr7 (90-139)||(28647104-28647153)
[»] chr2 (2 HSPs)
chr2 (89-134)||(43963880-43963925)
chr2 (92-144)||(26176217-26176269)
[»] scaffold0027 (1 HSPs)
scaffold0027 (99-139)||(122275-122315)


Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 45660532 - 45660938
Alignment:
Q  17 cacttcaaattgaaggcgtaacacggtgttcacacaggttattgtcagacaccaacacattaaacaatcttacccaaggacagactaatctgagggatcc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  45660532 cacttcaaattgaaggcgtaacacggtgttcacacaggttattgtcagacaccaacacattaaacaatcttacccaaggagagactaatttgagggatcc 45660631  T
Q  117 aattccaccgtccacttgtggggccccacatttaaagctagcaaagcttatggactagtccactgtattataactcaaattattatttctacgtgttagt 216  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  45660632 aatcccaccgtccacttgtggggccccacatttaaagctagcaaagcttatgaactagtccactgtattattactcaaattattacttctacgtgttagt 45660731  T
Q  217 gtcatgccagtgtcttaaatcatcaaaatcagtggaataatattcaaacaatatttcaaaaatagggggaaaatatttgttaccattgaattgttttgat 316  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45660732 gtcatgccggtgtcttaaatcatcaaaatcagtggaataatattcaaacaatatttcaaaaatagggggaaaatatttgttaccattgaattgttttgat 45660831  T
Q  317 gcttgtatttcttcaattgacccatcaacaagagcaaattcctttccaattccaaaacacgtgactgagcttgtcgttctcgttcatcagcttcgttccc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45660832 gcttgtatttcttcaattgacccatcaacaagagcaaattcctttccaattccaaaacacgtgactgagcttgtcgttctcgttcatcagcttcgttccc 45660931  T
Q  417 aaattcc 423  Q
    |||||||    
T  45660932 aaattcc 45660938  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 26599495 - 26599444
Alignment:
Q  89 cccaaggacagactaatctgagggatccaattccaccgtccacttgtggggc 140  Q
    ||||| ||| ||| |||||||||| |||||| ||||||||||||||||||||    
T  26599495 cccaaagaccgaccaatctgaggggtccaatcccaccgtccacttgtggggc 26599444  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 3869888 - 3869840
Alignment:
Q  91 caaggacagactaatctgagggatccaattccaccgtccacttgtgggg 139  Q
    ||||||| |||||||||||||| |||||| |||| ||| ||||||||||    
T  3869888 caaggaccgactaatctgaggggtccaatcccactgtcaacttgtgggg 3869840  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 2379594 - 2379679
Alignment:
Q  310 ttttgatgcttgtatttcttcaattgacccatcaacaagagcaaattcctttccaattccaaaacacgtgactgagcttgtcgttc 395  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||| | ||| ||||| || |||||    
T  2379594 ttttgatgcttgtatttcttcaattcatccatcaacaagagcaaattccttttgaattccaaaacccttgattgagcatgacgttc 2379679  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 9126479 - 9126560
Alignment:
Q  89 cccaaggacagactaatctgagggatccaattccaccgtccacttgtggggccccacatttaaagctagcaaagcttatggactag 174  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||||  |||  || ||||||||||   |||||||||||||||||    
T  9126479 cccaaggaccgactaatctgagggatccaatcccaccgtctacttgcagggttcc-catttaaagc---caaagcttatggactag 9126560  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 34694592 - 34694634
Alignment:
Q  90 ccaaggacagactaatctgagggatccaattccaccgtccact 132  Q
    |||||||||||||||||||||||  ||||| ||||||||||||    
T  34694592 ccaaggacagactaatctgaggggaccaatcccaccgtccact 34694634  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 6427168 - 6427114
Alignment:
Q  90 ccaaggacagactaatctgagggatccaattccaccgtccacttgtggggcccca 144  Q
    |||||||| |||||||| ||||||| |||| |||| |||||||||||||||||||    
T  6427168 ccaaggaccgactaatccgagggattcaatcccactgtccacttgtggggcccca 6427114  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 37047173 - 37047106
Alignment:
Q  89 cccaaggacagactaatctgagggatccaattccaccgtccacttgtggggccccacatttaaagctag 157  Q
    ||||||| | ||||||||  |||| |||||| ||||||||||||||||||| ||| |||||||||||||    
T  37047173 cccaagggccgactaatcctaggggtccaatcccaccgtccacttgtgggggccc-catttaaagctag 37047106  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 72542 - 72592
Alignment:
Q  89 cccaaggacagactaatctgagggatccaattccaccgtccacttgtgggg 139  Q
    ||||||||| |||| ||||||||| |||||| ||||||| |||||||||||    
T  72542 cccaaggaccgactcatctgaggggtccaatcccaccgttcacttgtgggg 72592  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 31206424 - 31206374
Alignment:
Q  89 cccaaggacagactaatctgagggatccaattccaccgtccacttgtgggg 139  Q
    ||||||||| |||||||| ||||  |||||| |||||||||||||||||||    
T  31206424 cccaaggaccgactaatccgaggagtccaatcccaccgtccacttgtgggg 31206374  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 16247027 - 16247067
Alignment:
Q  99 gactaatctgagggatccaattccaccgtccacttgtgggg 139  Q
    |||||||| ||||| |||||| |||||||||||||||||||    
T  16247027 gactaatccgaggggtccaatcccaccgtccacttgtgggg 16247067  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 28647153 - 28647104
Alignment:
Q  90 ccaaggacagactaatctgagggatccaattccaccgtccacttgtgggg 139  Q
    ||||||||||||||||  |||||| ||||| |||||| ||||||||||||    
T  28647153 ccaaggacagactaattcgagggaaccaatcccaccgcccacttgtgggg 28647104  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 43963880 - 43963925
Alignment:
Q  89 cccaaggacagactaatctgagggatccaattccaccgtccacttg 134  Q
    |||||||||  ||||||||||||| |||||| ||||||||||||||    
T  43963880 cccaaggaccaactaatctgaggggtccaatcccaccgtccacttg 43963925  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 26176217 - 26176269
Alignment:
Q  92 aaggacagactaatctgagggatccaattccaccgtccacttgtggggcccca 144  Q
    |||||| ||||||||||| || |||||| |||||||||||||| |||| ||||    
T  26176217 aaggaccgactaatctgaagggtccaatcccaccgtccacttgcgggggccca 26176269  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 122275 - 122315
Alignment:
Q  99 gactaatctgagggatccaattccaccgtccacttgtgggg 139  Q
    |||||||||||||| ||||||| ||| ||||||||||||||    
T  122275 gactaatctgaggggtccaatttcacagtccacttgtgggg 122315  T

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