View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_high_9 (Length: 362)
Name: NF6343_high_9
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 7887582 - 7887923
Alignment:
| Q |
18 |
ttaaccaagtgacttatagtatagtcgtagatgcaccttcaaatgtggttgagatccatgttcatgttcgaatacttgaaattgttaaaaatggaatatt |
117 |
Q |
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| T |
7887582 |
ttaaccaagtgacttatagtatagtcgtagatgcaccttcaaatgtggttgagatccatgttcatgttcgaatacttgaaattgttaaaaatggaatatt |
7887681 |
T |
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| Q |
118 |
tggaaagaatggaacactgccttttataagatagatgagtcagtgtctccctctgattcaggaaacggcaatgcgcaatgtaatg-----ttgcatcatt |
212 |
Q |
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| T |
7887682 |
tggaaagaatggaacactgccttttataagatagatgagtcagtgtctcccactgattcaggaaacggcaatgcgcaatgtaatgttgcattgcatcatt |
7887781 |
T |
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| Q |
213 |
tctttctttattaactgtacnnnnnnntatcttaggttgataggattttttcaaaggtgaatt--tatcctatttcttcgtttccaattcatgtattctt |
310 |
Q |
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| T |
7887782 |
tctttctttattaactgtacaaaaaaaaatcttaggttgataggattttttcaaagctgaatttatatcctatttcttcgtttccaattcatgtattctt |
7887881 |
T |
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| Q |
311 |
attatcgatatcaccaattcgtagttttttcatttgtctgtg |
352 |
Q |
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| T |
7887882 |
attatcgatatcaccaattcgtagttttttcatttgtttgtg |
7887923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 16352788 - 16352749
Alignment:
| Q |
301 |
atgtattcttattatcgatatcaccaattcgtagtttttt |
340 |
Q |
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| T |
16352788 |
atgtattcttatcatcgatatcaccgattcgtagtttttt |
16352749 |
T |
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