View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_low_1 (Length: 538)
Name: NF6343_low_1
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 10 - 521
Target Start/End: Original strand, 18357512 - 18358022
Alignment:
| Q |
10 |
catcatcatggcttaattcaaggaaaatggagatttttgaattagaatgttacccaaatgttcatcgtgccctaatggagacaaatagactatagaatca |
109 |
Q |
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| T |
18357512 |
catcatcatggcttaattcaaggaaaatggagatttttgaattagaatattacccaaatgttcatcgtgccctaatggagacaaatagactatagaatca |
18357611 |
T |
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| Q |
110 |
attgtcatttaaattcaacccggttattattgctgttatatctccatcatagagaatatgaacatcctcaatctttcatatacacttttcttatgtaacc |
209 |
Q |
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| T |
18357612 |
attgtcatttaaattcaactcagttattattactgttatatctccatcatagagaatatgaacatcctcaatctttcatatacacttttcttatgtaacc |
18357711 |
T |
|
| Q |
210 |
actgcacatttatgtttacccttcatctcccccatcaacctaccgttactaattatttgctccccctagttagctactatatatataagaccctaagtaa |
309 |
Q |
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| T |
18357712 |
actgcacatttatgtttacccttcatctcccc-atgaacctaccgttactaattatttactctccctagttagctactatatatataaaaccctaagtaa |
18357810 |
T |
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| Q |
310 |
gtttcaccataacaatccaaactcatcatatatagaaatataaaaaatttcttctaatactaaaatggcttcctctcataaaatatttgttcttgttgct |
409 |
Q |
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| T |
18357811 |
gtttcaccataacaatccaaactcgtcatatatagaaatataaaaaatttcttctaatactaaaatggcttcctctcataaaatatttgttcttgttgct |
18357910 |
T |
|
| Q |
410 |
cttgctcttgtgttcattgcattgaactcatcaatatctatagtggagtctaggaaactgtctaaccctaattccaatatgaggagccttgaagcaagat |
509 |
Q |
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| T |
18357911 |
cttgctcttgtgttcattgcattgaactcatcaacgtctatagtggaatctaggaaactgtctaaccctaattccaatttgatgagccttgaagcaagat |
18358010 |
T |
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| Q |
510 |
taaaggtgagtg |
521 |
Q |
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| T |
18358011 |
tgaaggtgagtg |
18358022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 59 - 521
Target Start/End: Original strand, 18345724 - 18346194
Alignment:
| Q |
59 |
ttacccaaatgttcatcgtgccctaatggagacaaatagactatagaatcaattgtcatttaaattcaacccggttattattgctgttatatctccatca |
158 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
18345724 |
ttacacaaatgttcatcgtgccctaatggagacaaatagactatagaatcaattgtcatttaaattcaacccagttattattactgttatatctccatca |
18345823 |
T |
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| Q |
159 |
tagagaatatgaacatcctcaatctttcatatacacttttcttatgtaaccactgcacatttatgtttacccttcatctcccccatcaacctaccgttac |
258 |
Q |
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| T |
18345824 |
tagagaatatgaacatcctcaatctttcatatacacttttcttatgtaaccactgcacatttatgtttacccttcatctcccccatcaacctaccgttac |
18345923 |
T |
|
| Q |
259 |
taattatttgctccccctagttagctac--------tatatatataagaccctaagtaagtttcaccataacaatccaaactcatcatatatagaaatat |
350 |
Q |
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||||||||| ||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
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| T |
18345924 |
taattatttactccccctacttagctactatatatatatatatatataaccctaagtaactttcaccataacaatccaaactcgtcatatatagatatat |
18346023 |
T |
|
| Q |
351 |
aaaaaatttcttctaatactaaaatggcttcctctcataaaatatttgttcttgttgctcttgctcttgtgttcattgcattgaactcatcaatatctat |
450 |
Q |
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| T |
18346024 |
aaaaaatttcttctaatactaaaatggcttcctctcataaaatatttgttcttgttgctcttgctcttgtgttcattgcattgaactcatcaacgtctat |
18346123 |
T |
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| Q |
451 |
agtggagtctaggaaactgtctaaccctaattccaatatgaggagccttgaagcaagattaaaggtgagtg |
521 |
Q |
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| T |
18346124 |
agtggaatctaggaaactgtctaaccctaattccaatttgatgagccttgaagcaagattgaaggtgagtg |
18346194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 18343507 - 18343551
Alignment:
| Q |
12 |
tcatcatggcttaattcaaggaaaatggagatttttgaattagaa |
56 |
Q |
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| T |
18343507 |
tcatcatggcttaattcaaggaaaatggagatttttgaattagaa |
18343551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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