View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6343_low_11 (Length: 334)

Name: NF6343_low_11
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6343_low_11
NF6343_low_11
[»] chr2 (1 HSPs)
chr2 (15-334)||(35949549-35949869)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 35949869 - 35949549
Alignment:
Q  15 cagagatcaaggaggcaacacatcaacacgatggtgaatacatagcggtgtaacaacaaaacccgacaaaaccaaacaacctgcaatccaaaagcaggtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35949869 cagagatcaaggaggcaacacatcaacacgatggtgaatacatagcggtgtaacaacaaaacccgacaaaaccaaacaacctgcaatccaaaagcaggtt 35949770  T
Q  115 acaagtacttcaaagtgaatcgcggtgagctaacttcaaaccgcccagaggccagaagtgctaagaggtggtgacgcctatagaagacttgcacaacagc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  35949769 acaagtacttcaaagtgaatcgcggtgagctaacttcaaaccgcccagaggccagaagtgctaagaggtggtgacgcctatagaagacttgcacaccacc 35949670  T
Q  215 aaaacattctctacatgtttcctaaacaagtatggattggaggggaaagaaaactaggaagttggcagacaatttgggtaggcggtgggtgagttccaga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35949669 aaaacattctctacatgtttcctaaacaagtatggattggaggggaaagaaaactaggaagttggcagacaatctgggtaggcggtgggtgagttccaga 35949570  T
Q  315 gaga-gggagataacttcttt 334  Q
     ||| |||||| |||||||||    
T  35949569 tagatgggagagaacttcttt 35949549  T

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